Transcript 706313

Transcript

ID CARD

MetamORF ID

706313

ENSMUST00000147724

Name

Tcp1-208

Strand

Biotype

processed_transcript

Start-end positions

12915701-12918114

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:21454

Aliases

AI528772,
c-cpn, CCT, Cct1,
Ccta, ENSMUSG00000068039, MGI:98535,
NCBI:21454, OFF:Tcp1, p63,
Tcp-1, Tcp1, Tp63,
TRic

Chr 17

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
706506	39	TTG ...	LAW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1194365	132	ACG ...	TVS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
704514	48	TTG ...	LGQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
38374	54	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
38160	93	GTG ...	VSF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF
954561	66	AAG ...	KFC ...	Ribo-seq	AAG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
955733	114	ATT ...	IVK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
708145	63	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
36679	66	GTG ...	VVP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
706312	168	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1192176	78	ATC ...	IPQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
37964	108	TTG ...	LSA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF
478455	72	TTG ...	LPT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1190352	132	ATC ...	ILK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
481110	84	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
36481	51	GTG ...	VAV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF
1193857	30	ATA ...	IKC ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1192027	90	GTG ...	VES ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14

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