Transcript 768404

Transcript

ID CARD

MetamORF ID

768404

ENSMUST00000146362

Name

Hnrnpu-203

Strand

Biotype

processed_transcript

Start-end positions

178332103-178334546

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTA ...

Genome browsers

UCSC

Gene

NCBI:51810

Aliases

AA408410,
AI256620, AL024194, AL024437,
AW557595, C86794, ENSMUSG00000039630,
hnRNP U, Hnrnpu, Hnrpu,
MGI:1858195, NCBI:51810, OFF:Hnrnpu,
SAFA, Sp120

Chr 1

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
12689	81	TTG ...	LNL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver
7665	174	ATG ...	MDK ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver
29062	36	GTG ...	VIC ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF
118724	99	CTG ...	LKG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Liver, MEF
9330	201	ATG ...	MKL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF
369210	153	CTG ...	LHF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Liver, MEF
23442	96	GTG ...	VLL ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Liver
805359	87	CTG ...	LWA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Liver
83794	204	CTG ...	LMK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF
29834	33	GTG ...	VCQ ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Liver
39801	156	TTG ...	LPL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver
34781	159	GTG ...	VLP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
8513	210	TTG ...	LKL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF
42929	36	CTG ...	LVT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
40817	54	GTG ...	VGW ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Liver
67281	54	CTG ...	LEE ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Liver
37635	69	TTG ...	LLS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Liver
13034	42	CTG ...	LYF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
26287	183	ATG ...	MRR ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF
34972	105	ATG ...	MFS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
18806	36	CTG ...	LVT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver
18409	162	TTG ...	LVL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver
10944	36	TTG ...	LIY ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
804428	126	CTG ...	LSA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Liver
23803	87	GTG ...	VQL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
38411	195	TTG ...	LNS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF
40127	129	TTG ...	LLT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
41075	126	CTG ...	LTG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver

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