Transcript 640725

Transcript

ID CARD

MetamORF ID

640725

ENSMUST00000138483

Name

Eftud2-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

102862611-102877690

CDS Start-stop positions

102870235-

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:20624

Aliases

116kDa,
Eftud2, ENSMUSG00000020929, MGI:1336880,
NCBI:20624, OFF:Eftud2, Snrp116,
U5-116kD

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
449215	51	ATG ...	MFF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	B_cell
447026	30	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, B_cell
643320	165	GTG ...	VGE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3
452157	45	TTG ...	LFN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF	B_cell
642855	126	GTG ...	VLH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3
18595	45	CTG ...	LME ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, MEF
649373	114	ATG ...	MTW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	3T3
641370	69	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	3T3
446805	66	GTG ...	VKT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	3T3, MEF
648743	39	ATG ...	MEW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	3T3
645479	123	CTG ...	LHE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
649328	162	TTG ...	LCF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	3T3, Brain
653676	129	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3
649598	72	CTG ...	LMR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
646220	63	ATG ...	MRT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	3T3
642572	132	ATG ...	MRT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	3T3
650338	42	GTG ...	VDF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	3T3, B_cell
644337	57	CTG ...	LAC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3

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