Transcript 369124

Transcript

ID CARD

MetamORF ID

369124

ENSMUST00000138279

Name

Atp5j-205

Strand

Biotype

protein_coding

Start-end positions

84828439-84835602

CDS Start-stop positions

-84831492

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:11957

Aliases

Atp5j,
Atp5pf, CF6, ENSMUSG00000022890,
MGI:107777, NCBI:11957, OFF:Atp5j

Chr 16

ORFs

6 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34502	66	GTG ...	VLQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	Brain
34292	36	TTG ...	LIL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Brain
34414	69	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF	Brain
699076	183	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
696595	108	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
34860	57	CTG ...	LWP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Brain

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