Gene NCBI:11957 | MetamORF

Gene

ID CARD

NCBI:11957

Aliases

Atp5j
Atp5pf, CF6, ENSMUSG00000022890
MGI:107777, NCBI:11957, OFF:Atp5j

Chromosome

Transcripts

52 ORFs
10 known transcripts
134 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

33439

ENSMUST00000127651

Atp5j-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34856	147	ATG ...	MKS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Testis
34860	57	CTG ...	LWP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Testis
421895	45	ATA ...	IRN ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
33438	39	GTG ...	VDK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Testis
34414	69	TTG ...	LVL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Testis
33992	33	CTG ...	LSF ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, Testis
34771	114	GTG ...	VHL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
34430	87	GTG ...	VAA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Testis
35173	81	GTG ...	VAF ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
376095	36	ATG ...	MTV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
34502	66	GTG ...	VLQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, Testis
34089	165	ATG ...	MDF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Testis
953027	69	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
33948	30	CTG ...	LYR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Testis
952461	102	AGG ...	RNI ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
34902	162	CTG ...	LQR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, Testis
951267	30	ATA ...	IRE ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
34980	183	TTG ...	LGS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Testis
693737	141	CTG ...	LSH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
34292	36	TTG ...	LIL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Testis
952301	33	ATC ...	ILY ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
951440	75	ACG ...	TTE ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
953197	96	ATT ...	IGV ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
952879	156	AGG ...	RIF ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
953203	75	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
33474	168	ATG ...	MMD ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Testis
476249	54	GTG ...	VSV ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC
476680	93	CTG ...	LSG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC
34536	108	TTG ...	LKR ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, Testis
475919	39	CTG ...	LKP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell

369942

ENSMUST00000114191

Atp5j-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
33992	33	CTG ...	LSF ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, C2C12, E14
698548	84	GTG ...	VAA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, Liver, MEF
698751	72	GTG ...	VTL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, Liver
33948	30	CTG ...	LYR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
34860	57	CTG ...	LWP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
34292	36	TTG ...	LIL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
34414	69	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
376095	36	ATG ...	MTV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14
34502	66	GTG ...	VLQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver
34430	87	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	E14
1188064	36	AAG ...	KRV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
698396	66	CTG ...	LAA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, Liver, MEF
421991	48	GTG ...	VQE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12, E14
421895	45	ATA ...	IRN ...	Ribo-seq	ATA	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, E14

693054

ENSMUST00000155956

Atp5j-212

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34089	165	ATG ...	MDF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
696137	66	TTG ...	LAS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
34980	183	TTG ...	LGS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
475946	48	TTG ...	LRW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
34856	147	ATG ...	MKS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver
476680	93	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
475919	39	CTG ...	LKP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
33474	168	ATG ...	MMD ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
476249	54	GTG ...	VSV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
376095	36	ATG ...	MTV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
953027	69	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
693737	141	CTG ...	LSH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3

12584

ENSMUST00000146225

Atp5j-209

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34502	66	GTG ...	VLQ ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF
1189467	195	AGG ...	RLS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
33948	30	CTG ...	LYR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
33438	39	GTG ...	VDK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF, Spleen_B_cell
33992	33	CTG ...	LSF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Liver, MEF
34980	183	TTG ...	LGS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, MEF
422016	204	AGG ...	RIF ...	Ribo-seq	AGG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12, E14, Liver, MEF
35245	120	ATG ...	MLV ...	Ribo-seq	ATG		14	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
34089	165	ATG ...	MDF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Liver, MEF
35173	81	GTG ...	VAF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF, Spleen_B_cell
34771	114	GTG ...	VHL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF, Spleen_B_cell
953303	144	ATT ...	IGV ...	Ribo-seq	ATT		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
34856	147	ATG ...	MKS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Liver, MEF
34536	108	TTG ...	LKR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF, Spleen_B_cell
35458	156	TTG ...	LKR ...	Ribo-seq	TTG		17	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
953286	150	AGG ...	RNI ...	Ribo-seq	AGG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, Liver
33474	168	ATG ...	MMD ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Liver, MEF
34292	36	TTG ...	LIL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Liver, MEF
12593	162	GTG ...	VHL ...	Ribo-seq	GTG		18	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
34860	57	CTG ...	LWP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF
12583	210	CTG ...	LQR ...	Ribo-seq	CTG		25	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
34902	162	CTG ...	LQR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF, Spleen_B_cell
34414	69	TTG ...	LVL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF
35440	129	GTG ...	VAF ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF, Neutrophil, NSC, Testis

473868

ENSMUST00000140036

Atp5j-206

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34502	66	GTG ...	VLQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
34292	36	TTG ...	LIL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
34856	147	ATG ...	MKS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
33474	168	ATG ...	MMD ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
475919	39	CTG ...	LKP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
376095	36	ATG ...	MTV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
34089	165	ATG ...	MDF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
33948	30	CTG ...	LYR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
33992	33	CTG ...	LSF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
34860	57	CTG ...	LWP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
476680	93	CTG ...	LSG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
475946	48	TTG ...	LRW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
34980	183	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
34414	69	TTG ...	LVL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
476249	54	GTG ...	VSV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell

35279

ENSMUST00000023608

Atp5j-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
475919	39	CTG ...	LKP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil
34860	57	CTG ...	LWP ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
476249	54	GTG ...	VSV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil
35319	138	CTG ...	LAA ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
35278	144	GTG ...	VTL ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
34430	87	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	MEF
33948	30	CTG ...	LYR ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, R1E, v6-5
35487	120	GTG ...	VQV ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
34292	36	TTG ...	LIL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
696595	108	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
35659	156	GTG ...	VAA ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
33992	33	CTG ...	LSF ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
34502	66	GTG ...	VLQ ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
34414	69	TTG ...	LVL ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5

369124

ENSMUST00000138279

Atp5j-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34502	66	GTG ...	VLQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	Brain
34292	36	TTG ...	LIL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Brain
34414	69	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF	Brain
699076	183	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
696595	108	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
34860	57	CTG ...	LWP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Brain

1408592

ENSMUST00000148787

Atp5j-210

retained_intron

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

476249

GTG ...

VSV ...

Ribo-seq

GTG

weak

sORFs_org_Mouse

Liver

976085

ENSMUST00000114193

Atp5j-203

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
33948	30	CTG ...	LYR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
34502	66	GTG ...	VLQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
34292	36	TTG ...	LIL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
34414	69	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
34860	57	CTG ...	LWP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
33992	33	CTG ...	LSF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC

1002924

ENSMUST00000146103

Atp5j-208

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34502	66	GTG ...	VLQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
33438	39	GTG ...	VDK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
33992	33	CTG ...	LSF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
34771	114	GTG ...	VHL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
34414	69	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
33948	30	CTG ...	LYR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
34860	57	CTG ...	LWP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
35173	81	GTG ...	VAF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
34902	162	CTG ...	LQR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
34292	36	TTG ...	LIL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
34536	108	TTG ...	LKR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
34856	147	ATG ...	MKS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF

3313093

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
35245	120	ATG ...	MLV ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

52 ORFs
10 known transcripts
134 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

34856

147

ATG...

MKS...

ATG

Intronic
sORF
ncRNA

B_cell, Testis, Brain,
Spleen_B_cell, 3T3, Liver,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
693054	ENSMUST00000155956	Atp5j-212	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
1002924	ENSMUST00000146103	Atp5j-208	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

33992

CTG...

LSF...

CTG

InCDS
Overlapping
sORF
ncRNA
Intronic

Brain, C2C12, E14,
Liver, MEF, B_cell,
BMDC, Testis, Spleen_B_cell,
Neutrophil, NSC, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq	weak	2	sORFs_org_Mouse
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse
1002924	ENSMUST00000146103	Atp5j-208	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq	weak	2	sORFs_org_Mouse
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse
976085	ENSMUST00000114193	Atp5j-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

34089

165

ATG...

MDF...

ATG

ncRNA
sORF
Intronic

Brain, Liver, Spleen_B_cell,
MEF, B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
693054	ENSMUST00000155956	Atp5j-212	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

34502

GTG...

VLQ...

GTG

ncRNA
sORF
InCDS
Overlapping
Intronic

3T3, Liver, MEF,
Brain, Spleen_B_cell, BMDC,
B_cell, Testis, E14,
Neutrophil, NSC, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq	weak	3	sORFs_org_Mouse
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq	weak	2	sORFs_org_Mouse
369124	ENSMUST00000138279	Atp5j-205	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
976085	ENSMUST00000114193	Atp5j-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
1002924	ENSMUST00000146103	Atp5j-208	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse

1189467

195

AGG...

RLS...

AGG

ncRNA
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

698548

GTG...

VAA...

GTG

Alternative
sORF
Upstream

3T3, BMDC, E14,
Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse

698751

GTG...

VTL...

GTG

Alternative
sORF
Upstream

3T3, BMDC, E14,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse

33948

CTG...

LYR...

CTG

ncRNA
sORF
InCDS
Overlapping
Intronic

3T3, Liver, BMDC,
MEF, Brain, Spleen_B_cell,
B_cell, Testis, E14,
NSC, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq	moderate	2	sORFs_org_Mouse
976085	ENSMUST00000114193	Atp5j-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq	moderate	2	sORFs_org_Mouse
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
1002924	ENSMUST00000146103	Atp5j-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse

34860

CTG...

LWP...

CTG

Intronic
sORF
InCDS
Overlapping
ncRNA

B_cell, BMDC, Testis,
E14, MEF, Neutrophil,
NSC, R1E, v6-5,
Liver, Brain, Spleen_B_cell,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq	weak	2	sORFs_org_Mouse
976085	ENSMUST00000114193	Atp5j-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
1002924	ENSMUST00000146103	Atp5j-208	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq	weak	3	sORFs_org_Mouse
369124	ENSMUST00000138279	Atp5j-205	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

33438

GTG...

VDK...

GTG

ncRNA
sORF
Intronic

3T3, Liver, MEF,
Spleen_B_cell, BMDC, Brain,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		4	sORFs_org_Mouse
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
1002924	ENSMUST00000146103	Atp5j-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse

475919

CTG...

LKP...

CTG

sORF
Upstream
ncRNA
Intronic

MEF, Neutrophil, Spleen_B_cell,
3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
693054	ENSMUST00000155956	Atp5j-212	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

421895

ATA...

IRN...

ATA

Intronic
sORF
InCDS
Overlapping

BMDC, C2C12, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

476249

GTG...

VSV...

GTG

sORF
Upstream
Intronic
ncRNA

MEF, Neutrophil, Liver,
3T3, B_cell, BMDC,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
1408592	ENSMUST00000148787	Atp5j-210	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
693054	ENSMUST00000155956	Atp5j-212	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

34292

TTG...

LIL...

TTG

ncRNA
sORF
InCDS
Overlapping
Intronic

Brain, Spleen_B_cell, BMDC,
Liver, MEF, B_cell,
Testis, E14, Neutrophil,
NSC, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq	moderate	2	sORFs_org_Mouse
369124	ENSMUST00000138279	Atp5j-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
976085	ENSMUST00000114193	Atp5j-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq	moderate	2	sORFs_org_Mouse
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
1002924	ENSMUST00000146103	Atp5j-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

35319

138

CTG...

LAA...

CTG

Alternative
Overlapping
sORF
Upstream

B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq		15	sORFs_org_Mouse

696137

TTG...

LAS...

TTG

ncRNA
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
693054	ENSMUST00000155956	Atp5j-212	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

34980

183

TTG...

LGS...

TTG

ncRNA
sORF
Intronic

Liver, MEF, Brain,
B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
693054	ENSMUST00000155956	Atp5j-212	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

34414

TTG...

LVL...

TTG

Intronic
sORF
InCDS
Overlapping
ncRNA

B_cell, Testis, Brain,
BMDC, MEF, Liver,
Spleen_B_cell, E14, Neutrophil,
NSC, R1E, v6-5,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
369124	ENSMUST00000138279	Atp5j-205	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
976085	ENSMUST00000114193	Atp5j-203	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
1002924	ENSMUST00000146103	Atp5j-208	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq	strong	2	sORFs_org_Mouse
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq	strong	8	sORFs_org_Mouse
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq	strong	3	sORFs_org_Mouse

422016

204

AGG...

RIF...

AGG

ncRNA
sORF

BMDC, C2C12, E14,
Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		5	sORFs_org_Mouse

35278

144

GTG...

VTL...

GTG

Alternative
Overlapping
sORF
Upstream

B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq		13	sORFs_org_Mouse

33474

168

ATG...

MMD...

ATG

ncRNA
sORF
Intronic

Brain, Spleen_B_cell, Liver,
MEF, B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
693054	ENSMUST00000155956	Atp5j-212	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

34771

114

GTG...

VHL...

GTG

Intronic
sORF
ncRNA

B_cell, Brain, Testis,
MEF, 3T3, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
1002924	ENSMUST00000146103	Atp5j-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		4	sORFs_org_Mouse

35245

120

ATG...

MLV...

ATG

ncRNA
sORF

3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
Testis, v6-5,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		14	sORFs_org_Mouse
3313093	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

34430

GTG...

VAA...

GTG

Intronic
sORF
Upstream

B_cell, BMDC, Testis,
MEF, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq		3	sORFs_org_Mouse
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

35173

GTG...

VAF...

GTG

Intronic
sORF
ncRNA

B_cell, Brain, Testis,
3T3, Liver, MEF,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		4	sORFs_org_Mouse
1002924	ENSMUST00000146103	Atp5j-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse

475946

TTG...

LRW...

TTG

ncRNA
sORF

3T3, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
693054	ENSMUST00000155956	Atp5j-212	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

376095

ATG...

MTV...

ATG

Intronic
sORF
ncRNA
Alternative
Upstream

BMDC, MEF, Brain,
E14, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
693054	ENSMUST00000155956	Atp5j-212	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

476680

CTG...

LSG...

CTG

ncRNA
sORF
Intronic

3T3, MEF, Spleen_B_cell,
B_cell, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
693054	ENSMUST00000155956	Atp5j-212	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
473868	ENSMUST00000140036	Atp5j-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

953027

CTG...

LAA...

CTG

Intronic
sORF
ncRNA

BMDC, Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
693054	ENSMUST00000155956	Atp5j-212	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

952461

102

AGG...

RNI...

AGG

Intronic
sORF

BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

953303

144

ATT...

IGV...

ATT

ncRNA
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

34902

162

CTG...

LQR...

CTG

Intronic
sORF
ncRNA

B_cell, BMDC, Brain,
Testis, MEF, 3T3,
Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
1002924	ENSMUST00000146103	Atp5j-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		4	sORFs_org_Mouse

699076

183

GTG...

VAL...

GTG

sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
369124	ENSMUST00000138279	Atp5j-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

34536

108

TTG...

LKR...

TTG

ncRNA
sORF
Intronic

3T3, Liver, MEF,
Spleen_B_cell, Brain, B_cell,
BMDC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		4	sORFs_org_Mouse
1002924	ENSMUST00000146103	Atp5j-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse

35458

156

TTG...

LKR...

TTG

ncRNA
sORF

B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		17	sORFs_org_Mouse

951267

ATA...

IRE...

ATA

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

35487

120

GTG...

VQV...

GTG

Alternative
Overlapping
sORF
Upstream

B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq		13	sORFs_org_Mouse

953286

150

AGG...

RNI...

AGG

ncRNA
sORF

BMDC, E14, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

693737

141

CTG...

LSH...

CTG

Intronic
sORF
ncRNA

B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
693054	ENSMUST00000155956	Atp5j-212	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

12593

162

GTG...

VHL...

GTG

ncRNA
sORF

B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
Spleen_B_cell, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		18	sORFs_org_Mouse

696595

108

GTG...

VAL...

GTG

Alternative
sORF
Upstream

MEF, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
369124	ENSMUST00000138279	Atp5j-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1188064

AAG...

KRV...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

952301

ATC...

ILY...

ATC

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

951440

ACG...

TTE...

ACG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

953197

ATT...

IGV...

ATT

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

952879

156

AGG...

RIF...

AGG

Intronic
sORF

BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

12583

210

CTG...

LQR...

CTG

ncRNA
sORF

3T3, B_cell, BMDC,
Brain, C2C12, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
Spleen_B_cell, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		25	sORFs_org_Mouse

953203

GTG...

VTL...

GTG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33439	ENSMUST00000127651	Atp5j-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

698396

CTG...

LAA...

CTG

Alternative
sORF
Upstream

3T3, BMDC, E14,
Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse

35659

156

GTG...

VAA...

GTG

Alternative
Overlapping
sORF
Upstream

B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
35279	ENSMUST00000023608	Atp5j-201	protein_coding	Ribo-seq		13	sORFs_org_Mouse

421991

GTG...

VQE...

GTG

Alternative
sORF
Upstream

BMDC, C2C12, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
369942	ENSMUST00000114191	Atp5j-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

35440

129

GTG...

VAF...

GTG

ncRNA
sORF

B_cell, Brain, Liver,
MEF, Neutrophil, NSC,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12584	ENSMUST00000146225	Atp5j-209	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

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