Transcript 419508

Transcript

ID CARD

MetamORF ID

419508

ENSMUST00000137120

Name

Ift20-204

Strand

Biotype

retained_intron

Start-end positions

78536445-78541485

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

NCBI:55978

Aliases

0610009H04Rik,
AU015496, ENSMUSG00000001105, Ift20,
MGI:1915585, mIFT20, NCBI:55978,
OFF:Ift20

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
647573	57	CTG ...	LQL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF
1600663	78	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
310812	93	GTG ...	VTS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
293555	63	CTG ...	LIA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
20687	45	CTG ...	LQA ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, R1E, v6-5
21391	45	TTG ...	LHS ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, NSC, R1E, v6-5
773349	69	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
309047	90	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
644125	39	TTG ...	LIS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
20631	90	TTG ...	LLK ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, R1E
772671	66	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
18436	168	TTG ...	LGE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
650749	42	TTG ...	LLI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
301780	99	ATG ...	MSV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, v6-5
419507	90	GTG ...	VAA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, C2C12
297395	114	GTG ...	VWL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
19642	48	TTG ...	LSL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, v6-5
1601485	42	TTG ...	LVT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF
18232	36	CTG ...	LIA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, R1E, v6-5
21236	72	CTG ...	LCC ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, NSC, R1E, v6-5
292471	75	ATG ...	MTY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
639833	51	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, NSC
21588	87	CTG ...	LKS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, R1E
17896	48	ATG ...	MLH ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, NSC, R1E, v6-5
21257	33	TTG ...	LAS ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, v6-5
644556	54	GTG ...	VLL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, NSC
21820	30	TTG ...	LPK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
21554	30	CTG ...	LDS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, MEF, R1E, v6-5
18506	138	CTG ...	LNK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
18294	153	CTG ...	LHF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF

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