Transcript 242291

Transcript

ID CARD

MetamORF ID

242291

ENSMUST00000132013

Name

Msmo1-202

Strand

Biotype

retained_intron

Start-end positions

64718227-64733578

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:66234

Aliases

1500001G16Rik,
C78600, DESP4, ENSMUSG00000031604,
ERG25, MGI:1913484, Msmo1,
NCBI:66234, OFF:Msmo1, Sc4mol

Chr 8

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5519	123	TTG ...	LET ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
236068	42	TTG ...	LES ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
248772	186	TTG ...	LGL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
5352	132	CTG ...	LHP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF
78735	81	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
244340	246	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
429925	33	CTG ...	LDS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
242290	264	GTG ...	VEY ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain
1262995	36	ATA ...	IRA ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
5082	120	CTG ...	LWS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
5170	48	CTG ...	LAL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14
237599	156	GTG ...	VCI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
5651	111	ATG ...	MWT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
242415	60	TTG ...	LCF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
5625	147	TTG ...	LAC ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
78491	165	TTG ...	LVP ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
238400	63	ATG ...	MLG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
1260859	36	AGG ...	RPV ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
240640	30	GTG ...	VEV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
239373	255	GTG ...	VDS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, C2C12
1261186	99	AGG ...	RPL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
244406	84	GTG ...	VEH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1261496	33	AGG ...	RIF ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
249835	243	TTG ...	LPE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
241624	288	GTG ...	VFS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
80006	75	CTG ...	LHR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
79629	126	TTG ...	LAR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
81772	75	TTG ...	LCD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
610703	144	ATG ...	MPP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1264585	105	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
241486	153	TTG ...	LGI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
81909	114	TTG ...	LGC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
245118	270	CTG ...	LAV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
5281	150	GTG ...	VLA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF
5603	114	CTG ...	LIL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF
1262197	48	ATT ...	IYK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
82068	42	GTG ...	VTI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
239987	45	TTG ...	LWN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
248125	228	CTG ...	LQE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14
5530	48	TTG ...	LGQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
917251	120	ATA ...	INS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
757210	111	TTG ...	LGQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
78868	30	TTG ...	LLE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
80825	54	CTG ...	LWA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
79275	171	CTG ...	LNL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain

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