Transcript 492444

Transcript

ID CARD

MetamORF ID

492444

ENSMUST00000130940

Name

Gnas-215

Strand

Biotype

protein_coding

Start-end positions

174285256-174345540

CDS Start-stop positions

-174285435

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:14683

Aliases

5530400H20Rik,
A930027G11Rik, C130027O20Rik, ENSMUSG00000027523,
Galphas, Gnas, Gnas1,
Gnasxl, GPSA, Gs-alpha,
Gsa, GSP, MGI:95777,
NCBI:14683, Nesp, Nesp55,
Nespl, Oed-Sml, Oedsml,
OFF:Gnas, P1, P2,
P3, PHP1A, PHP1B,
POH, SCG6

Chr 2

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1165089	48	ATG ...	MGD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
50005	45	ATG ...	MVR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, E14
107292	30	CTG ...	LHV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, E14, Liver, Spleen_B_cell
105779	54	CTG ...	LES ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Liver, Spleen_B_cell
44488	39	ATG ...	MLM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
117498	48	GTG ...	VKQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	3T3, E14, Liver, Spleen_B_cell
49839	111	CTG ...	LES ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	E14, Liver, Spleen_B_cell
492580	57	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell
969283	51	AGG ...	RMR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	E14
1213943	51	AAG ...	KEQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
109116	57	GTG ...	VRA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	3T3, E14, Liver, Spleen_B_cell
968455	30	ACG ...	TCR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14
51191	102	ATG ...	MGL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	3T3, E14, Spleen_B_cell
499043	33	CTG ...	LRT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
971214	108	ACG ...	TCR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14
46930	36	GTG ...	VPA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	Spleen_B_cell
101293	45	TTG ...	LRP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
15014	87	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Spleen_B_cell
50194	102	TTG ...	LRP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell
1208399	135	CTG ...	LQD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	E14
1207489	63	AGG ...	RLC ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14
49569	108	ATG ...	MLM ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	3T3, E14, Liver, Spleen_B_cell
493473	30	CTG ...	LPC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell
1216330	87	AGG ...	RWT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1211272	30	ATT ...	ILL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
47051	48	ATG ...	MRE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell
1054637	207	GTG ...	VPP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14
51387	63	CTG ...	LQG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	B_cell, E14, MEF
44850	69	ATG ...	MPR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	sORF	3T3, E14, Spleen_B_cell
498265	51	CTG ...	LWS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	E14, Spleen_B_cell
44820	57	ATG ...	MWA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	Spleen_B_cell
49377	42	GTG ...	VRR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	Liver, Spleen_B_cell
99258	75	CTG ...	LWE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, E14, Spleen_B_cell
115864	75	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell
48591	39	ATG ...	MSA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
47452	75	ATG ...	MSM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	E14, Spleen_B_cell

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