Transcript 4549 | MetamORF

Transcript

ID CARD

MetamORF ID

4549

ENSMUST00000126534

Name

Ucp2-202

Strand

Biotype

protein_coding

Start-end positions

100493337-100502020

CDS Start-stop positions

100496823-100499350

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

NCBI:22228

Aliases

ENSMUSG00000033685,
MGI:109354, NCBI:22228, OFF:Ucp2,
Slc25a8, UCP 2, Ucp2,
UCPH

Chr 7

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
534657	30	CTG ...	LHH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell
74513	72	GTG ...	VFR ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, Neutrophil, R1E, v6-5
426912	90	GTG ...	VPL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
535128	72	CTG ...	LPS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Spleen_B_cell
533219	63	TTG ...	LPL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Spleen_B_cell
4641	51	ATG ...	MVA ...	Ribo-seq	ATG	strong	10	sORFs_org_Mouse	sORF Upstream	Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
77956	189	CTG ...	LGS ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
423877	33	TTG ...	LSP ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, NSC, Spleen_B_cell
4548	75	ATG ...	MEN ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	sORF Upstream	Brain, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, v6-5
915984	153	ATA ...	IHE ...	Ribo-seq	ATA		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
72954	111	ATG ...	MNF ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	sORF Upstream	Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, v6-5
532846	54	TTG ...	LQI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
753088	75	TTG ...	LQI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
533069	93	GTG ...	VSS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF, Spleen_B_cell
535181	72	CTG ...	LGQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
423815	96	ATG ...	MTS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
234323	33	GTG ...	VFS ...	Ribo-seq	GTG		13	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
530905	30	ATG ...	MPL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
423831	42	TTG ...	LVS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, Neutrophil, NSC, v6-5
1097790	54	TTG ...	LPI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	v6-5
1103315	111	TTG ...	LKN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	R1E, v6-5
532689	30	CTG ...	LER ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, R1E, Spleen_B_cell, v6-5
77072	132	CTG ...	LRS ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
426532	111	CTG ...	LCP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Spleen_B_cell
531168	30	CTG ...	LLM ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, Spleen_B_cell
535015	42	ATG ...	MLP ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell
752736	93	CTG ...	LGQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
426142	123	CTG ...	LPW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
534357	111	CTG ...	LSV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF, Spleen_B_cell
841333	108	TTG ...	LKV ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Neutrophil, v6-5
532644	63	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
423687	93	TTG ...	LPP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Neutrophil
424264	72	CTG ...	LGG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Neutrophil, v6-5
77382	150	CTG ...	LHS ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
753712	84	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
426353	33	CTG ...	LER ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Spleen_B_cell
533132	90	TTG ...	LKN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
424619	39	TTG ...	LPV ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
426604	117	CTG ...	LSV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, MEF, Spleen_B_cell
426079	99	GTG ...	VSS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, MEF, Neutrophil, Spleen_B_cell

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