Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:22228

Aliases

ENSMUSG00000033685
MGI:109354, NCBI:22228, OFF:Ucp2
Slc25a8, UCP 2, Ucp2
UCPH

Chromosome

7

Transcripts

74 ORFs
10 known transcripts
133 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

4549 ENSMUST00000126534 Ucp2-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

534657 30

CTG ...

LHH ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
74513 72

GTG ...

VFR ...

Ribo-seq
GTG

weak

7 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, E14, MEF,
Neutrophil, R1E, v6-5
426912 90

GTG ...

VPL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
535128 72

CTG ...

LPS ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Spleen_B_cell
533219 63

TTG ...

LPL ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, Spleen_B_cell
4641 51

ATG ...

MVA ...

Ribo-seq
ATG

strong

10 sORFs_org_Mouse
    sORF
    Upstream
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, v6-5
77956 189

CTG ...

LGS ...

Ribo-seq
CTG

13 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, v6-5
423877 33

TTG ...

LSP ...

Ribo-seq
TTG

weak

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, E14,
NSC, Spleen_B_cell
4548 75

ATG ...

MEN ...

Ribo-seq
ATG

moderate

9 sORFs_org_Mouse
    sORF
    Upstream
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Skin_tumor, v6-5
915984 153

ATA ...

IHE ...

Ribo-seq
ATA

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
72954 111

ATG ...

MNF ...

Ribo-seq
ATG

moderate

9 sORFs_org_Mouse
Johnstone2016
    sORF
    Upstream
Brain, E14, Glioma,
Liver, MEF, MESC,
Neutrophil, R1E, v6-5
532846 54

TTG ...

LQI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
753088 75

TTG ...

LQI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
533069 93

GTG ...

VSS ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, MEF, Spleen_B_cell
535181 72

CTG ...

LGQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
423815 96

ATG ...

MTS ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Glioma,
Liver, MEF, MESC,
Spleen_B_cell
234323 33

GTG ...

VFS ...

Ribo-seq
GTG

13 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, MEF,
Neutrophil, R1E, Spleen_B_cell,
v6-5
530905 30

ATG ...

MPL ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
423831 42

TTG ...

LVS ...

Ribo-seq
TTG

moderate

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, Neutrophil,
NSC, v6-5
1097790 54

TTG ...

LPI ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
v6-5
1103315 111

TTG ...

LKN ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
R1E, v6-5
532689 30

CTG ...

LER ...

Ribo-seq
CTG

strong

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
R1E, Spleen_B_cell, v6-5
77072 132

CTG ...

LRS ...

Ribo-seq
CTG

15 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, v6-5
426532 111

CTG ...

LCP ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, Spleen_B_cell
531168 30

CTG ...

LLM ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
Spleen_B_cell
535015 42

ATG ...

MLP ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, Spleen_B_cell
752736 93

CTG ...

LGQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
426142 123

CTG ...

LPW ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
534357 111

CTG ...

LSV ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, MEF, Spleen_B_cell
841333 108

TTG ...

LKV ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, Neutrophil, v6-5
532644 63

CTG ...

LPA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
423687 93

TTG ...

LPP ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Neutrophil
424264 72

CTG ...

LGG ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, Neutrophil, v6-5
77382 150

CTG ...

LHS ...

Ribo-seq
CTG

15 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, v6-5
753712 84

CTG ...

LPA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
426353 33

CTG ...

LER ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Spleen_B_cell
533132 90

TTG ...

LKN ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
424619 39

TTG ...

LPV ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell
426604 117

CTG ...

LSV ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, BMDC, MEF,
Spleen_B_cell
426079 99

GTG ...

VSS ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, BMDC, MEF,
Neutrophil, Spleen_B_cell
72955 ENSMUST00000129324 Ucp2-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

4548 75

ATG ...

MEN ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    sORF
BMDC, E14, Testis
535181 72

CTG ...

LGQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
BMDC, Spleen_B_cell
423831 42

TTG ...

LVS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    sORF
E14
424264 72

CTG ...

LGG ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    sORF
BMDC, Spleen_B_cell
4641 51

ATG ...

MVA ...

Ribo-seq
ATG

strong

3 sORFs_org_Mouse
    sORF
BMDC, E14, MEF
533132 90

TTG ...

LKN ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
BMDC, E14
77649 141

CTG ...

LRN ...

Ribo-seq
CTG

13 sORFs_org_Mouse
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Testis, v6-5
1103315 111

TTG ...

LKN ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
BMDC
1250417 36

AGG ...

RGS ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    sORF
E14
74513 72

GTG ...

VFR ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    sORF
BMDC, E14, Testis
532846 54

TTG ...

LQI ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
BMDC, Spleen_B_cell
78140 189

GTG ...

VTV ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, R1E,
Testis
532644 63

CTG ...

LPA ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
BMDC, Spleen_B_cell
72954 111

ATG ...

MNF ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    sORF
BMDC, E14, Testis
77073 ENSMUST00000207890 Ucp2-211 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

842431 42

CTG ...

LRP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
77072 132

CTG ...

LRS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Liver, MEF, Testis
535181 72

CTG ...

LGQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
840696 213

GTG ...

VRT ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
842211 156

GTG ...

VRT ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
533069 93

GTG ...

VSS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
843103 177

CTG ...

LGT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
841837 108

CTG ...

LQR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
532846 54

TTG ...

LQI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
532644 63

CTG ...

LPA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
423831 42

TTG ...

LVS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
844141 90

CTG ...

LGA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
221329 174

CTG ...

LQR ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
Liver
596942 201

ATG ...

MTL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
424264 72

CTG ...

LGG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
77956 189

CTG ...

LGS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Liver, Testis
840352 117

GTG ...

VPP ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
423687 93

TTG ...

LPP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
533132 90

TTG ...

LKN ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
844957 78

TTG ...

LAS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
234323 33

GTG ...

VFS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
72954 111

ATG ...

MNF ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Liver, MEF
845207 99

GTG ...

VKF ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
594639 147

TTG ...

LAS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Liver
220196 180

GTG ...

VVL ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Brain, Liver
4548 75

ATG ...

MEN ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Liver, MEF
841333 108

TTG ...

LKV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
4641 51

ATG ...

MVA ...

Ribo-seq
ATG

strong

5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Liver,
MEF
844608 120

CTG ...

LVA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
534357 111

CTG ...

LSV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
77382 150

CTG ...

LHS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
E14, Liver, Testis
74513 72

GTG ...

VFR ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
416122 ENSMUST00000153287 Ucp2-209 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

753712 84

CTG ...

LPA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
B_cell
72954 111

ATG ...

MNF ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    sORF
3T3, BMDC, Spleen_B_cell
74513 72

GTG ...

VFR ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    sORF
3T3, Brain, Spleen_B_cell
220196 180

GTG ...

VVL ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    sORF
3T3
752736 93

CTG ...

LGQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
B_cell
913277 81

AGG ...

RPQ ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    sORF
BMDC
914461 66

AAG ...

KLD ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    sORF
BMDC
753088 75

TTG ...

LQI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
B_cell
912902 87

AAG ...

KNE ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    sORF
BMDC
594639 147

TTG ...

LAS ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    sORF
3T3
596942 201

ATG ...

MTL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    sORF
3T3
4641 51

ATG ...

MVA ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    sORF
Spleen_B_cell
4548 75

ATG ...

MEN ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    sORF
3T3, C2C12, Spleen_B_cell
533132 90

TTG ...

LKN ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
Spleen_B_cell
73256 ENSMUST00000149808 Ucp2-207 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

73443 81

TTG ...

LGQ ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Neutrophil, Testis
535128 72

CTG ...

LPS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
534657 30

CTG ...

LHH ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
842513 99

GTG ...

VTY ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Neutrophil
73255 111

GTG ...

VVK ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Neutrophil, Testis
77461 57

GTG ...

VTY ...

Ribo-seq
GTG

10 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, Brain,
E14, Liver, Neutrophil,
R1E, Spleen_B_cell, Testis,
v6-5
532689 30

CTG ...

LER ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
531168 30

CTG ...

LLM ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
912341 102

ACG ...

TRY ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
843166 102

CTG ...

LVT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Neutrophil
77442 60

CTG ...

LVT ...

Ribo-seq
CTG

10 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, Brain,
E14, Liver, Neutrophil,
R1E, Spleen_B_cell, Testis,
v6-5
913105 132

ATA ...

IHE ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
77234 ENSMUST00000133498 Ucp2-205 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

77965 87

GTG ...

VTY ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil, Testis
77233 90

CTG ...

LVT ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil, R1E, Testis
535015 42

ATG ...

MLP ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
72313 ENSMUST00000207748 Ucp2-210 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

78181 102

GTG ...

VFS ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    sORF
Liver, MEF, Testis
77851 84

CTG ...

LHS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
E14, Testis
77089 123

CTG ...

LGS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
E14, Testis
4641 51

ATG ...

MVA ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    sORF
Testis
77739 66

CTG ...

LRS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
MEF, Testis
1024495 ENSMUST00000126381 Ucp2-201 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

4548 75

ATG ...

MEN ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
220196 180

GTG ...

VVL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
221329 174

CTG ...

LQR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
4641 51

ATG ...

MVA ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
594639 147

TTG ...

LAS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
596942 201

ATG ...

MTL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
72954 111

ATG ...

MNF ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
3030863 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

423815 96

ATG ...

MTS ...

Predicted
ATG

1 Samandi2017
    sORF
72954 111

ATG ...

MNF ...

Predicted
ATG

1 Samandi2017
    sORF
1472579 ENSMUST00000151221 Ucp2-208 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

841837 108

CTG ...

LQR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
844608 120

CTG ...

LVA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
844957 78

TTG ...

LAS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
423687 93

TTG ...

LPP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
423688 ENSMUST00000133044 Ucp2-204 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

423687 93

TTG ...

LPP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
Spleen_B_cell
423831 42

TTG ...

LVS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    sORF
Spleen_B_cell

ORFs

74 ORFs
10 known transcripts
133 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

534657 30

CTG...

LHH...

CTG InCDS
Overlapping
sORF
ncRNA
BMDC, Spleen_B_cell, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
73256 ENSMUST00000149808 Ucp2-207 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
4548 75

ATG...

MEN...

ATG sORF
Upstream
Intronic
ncRNA
BMDC, E14, Testis,
Brain, Liver, MEF,
Neutrophil, R1E, Skin_tumor,
v6-5, B_cell, 3T3,
C2C12, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
moderate 9 sORFs_org_Mouse
1024495 ENSMUST00000126381 Ucp2-201 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
moderate 4 sORFs_org_Mouse
416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
842431 42

CTG...

LRP...

CTG ncRNA
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
753712 84

CTG...

LPA...

CTG sORF
Alternative
InCDS
Overlapping
B_cell, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
74513 72

GTG...

VFR...

GTG Alternative
sORF
Upstream
ncRNA
Brain, E14, MEF,
Neutrophil, R1E, v6-5,
3T3, Spleen_B_cell, BMDC,
Testis, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
weak 7 sORFs_org_Mouse
416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
77072 132

CTG...

LRS...

CTG ncRNA
sORF
Alternative
Upstream
Liver, MEF, Testis,
3T3, B_cell, BMDC,
Brain, E14, Neutrophil,
R1E, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
3 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
15 sORFs_org_Mouse
535181 72

CTG...

LGQ...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
B_cell, BMDC, Spleen_B_cell,
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
426912 90

GTG...

VPL...

GTG Alternative
InCDS
Overlapping
sORF
BMDC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
535128 72

CTG...

LPS...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
BMDC, E14, Spleen_B_cell,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
73256 ENSMUST00000149808 Ucp2-207 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
73443 81

TTG...

LGQ...

TTG ncRNA
sORF
B_cell, Neutrophil, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

73256 ENSMUST00000149808 Ucp2-207 processed_transcript Ribo-seq
3 sORFs_org_Mouse
72954 111

ATG...

MNF...

ATG sORF
Upstream
ncRNA
Intronic
3T3, BMDC, Spleen_B_cell,
Brain, E14, Glioma,
Liver, MEF, MESC,
Neutrophil, R1E, v6-5,
B_cell, Testis,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
moderate 9 sORFs_org_Mouse
Johnstone2016
77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
moderate 3 sORFs_org_Mouse
72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
3030863 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
1024495 ENSMUST00000126381 Ucp2-201 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
840696 213

GTG...

VRT...

GTG ncRNA
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
842211 156

GTG...

VRT...

GTG ncRNA
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
533219 63

TTG...

LPL...

TTG InCDS
Overlapping
sORF
BMDC, E14, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
533069 93

GTG...

VSS...

GTG ncRNA
sORF
Alternative
Upstream
B_cell, BMDC, MEF,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
843103 177

CTG...

LGT...

CTG ncRNA
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
841837 108

CTG...

LQR...

CTG ncRNA
sORF
B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1472579 ENSMUST00000151221 Ucp2-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
532846 54

TTG...

LQI...

TTG ncRNA
sORF
Alternative
InCDS
Overlapping
B_cell, E14, BMDC,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
4641 51

ATG...

MVA...

ATG sORF
Upstream
Intronic
ncRNA
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, v6-5,
BMDC, Testis, Spleen_B_cell,
3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
strong 10 sORFs_org_Mouse
72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
72313 ENSMUST00000207748 Ucp2-210 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1024495 ENSMUST00000126381 Ucp2-201 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
strong 5 sORFs_org_Mouse
77965 87

GTG...

VTY...

GTG ncRNA
sORF
Neutrophil, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77234 ENSMUST00000133498 Ucp2-205 processed_transcript Ribo-seq
2 sORFs_org_Mouse
77956 189

CTG...

LGS...

CTG Alternative
sORF
Upstream
ncRNA
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, v6-5, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
13 sORFs_org_Mouse
77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
423877 33

TTG...

LSP...

TTG InCDS
Overlapping
sORF
B_cell, BMDC, E14,
NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
78181 102

GTG...

VFS...

GTG sORF
Liver, MEF, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

72313 ENSMUST00000207748 Ucp2-210 protein_coding Ribo-seq
4 sORFs_org_Mouse
532644 63

CTG...

LPA...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
B_cell, E14, BMDC,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
423831 42

TTG...

LVS...

TTG sORF
ncRNA
Alternative
InCDS
Overlapping
E14, B_cell, Liver,
Neutrophil, NSC, v6-5,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
423688 ENSMUST00000133044 Ucp2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
77851 84

CTG...

LHS...

CTG sORF
E14, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

72313 ENSMUST00000207748 Ucp2-210 protein_coding Ribo-seq
2 sORFs_org_Mouse
842513 99

GTG...

VTY...

GTG ncRNA
sORF
B_cell, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

73256 ENSMUST00000149808 Ucp2-207 processed_transcript Ribo-seq
2 sORFs_org_Mouse
915984 153

ATA...

IHE...

ATA InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
844141 90

CTG...

LGA...

CTG ncRNA
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
221329 174

CTG...

LQR...

CTG ncRNA
sORF
Intronic
3T3, B_cell, Brain,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
4 sORFs_org_Mouse
1024495 ENSMUST00000126381 Ucp2-201 retained_intron Ribo-seq
1 sORFs_org_Mouse
596942 201

ATG...

MTL...

ATG ncRNA
sORF
Intronic
B_cell, Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1024495 ENSMUST00000126381 Ucp2-201 retained_intron Ribo-seq
1 sORFs_org_Mouse
416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
753088 75

TTG...

LQI...

TTG Alternative
InCDS
Overlapping
sORF
E14, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
73255 111

GTG...

VVK...

GTG ncRNA
sORF
B_cell, Neutrophil, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

73256 ENSMUST00000149808 Ucp2-207 processed_transcript Ribo-seq
3 sORFs_org_Mouse
220196 180

GTG...

VVL...

GTG sORF
Intronic
ncRNA
3T3, Brain, B_cell,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1024495 ENSMUST00000126381 Ucp2-201 retained_intron Ribo-seq
1 sORFs_org_Mouse
77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
3 sORFs_org_Mouse
424264 72

CTG...

LGG...

CTG ncRNA
sORF
Alternative
Overlapping
Upstream
B_cell, BMDC, Spleen_B_cell,
E14, Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
77233 90

CTG...

LVT...

CTG ncRNA
sORF
Neutrophil, R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77234 ENSMUST00000133498 Ucp2-205 processed_transcript Ribo-seq
3 sORFs_org_Mouse
840352 117

GTG...

VPP...

GTG ncRNA
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
77089 123

CTG...

LGS...

CTG sORF
E14, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

72313 ENSMUST00000207748 Ucp2-210 protein_coding Ribo-seq
2 sORFs_org_Mouse
77461 57

GTG...

VTY...

GTG ncRNA
sORF
B_cell, BMDC, Brain,
E14, Liver, Neutrophil,
R1E, Spleen_B_cell, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

73256 ENSMUST00000149808 Ucp2-207 processed_transcript Ribo-seq
10 sORFs_org_Mouse
423687 93

TTG...

LPP...

TTG ncRNA
sORF
InCDS
Overlapping
B_cell, Spleen_B_cell, E14,
Neutrophil, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
423688 ENSMUST00000133044 Ucp2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1472579 ENSMUST00000151221 Ucp2-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
423815 96

ATG...

MTS...

ATG Alternative
InCDS
Overlapping
sORF
BMDC, E14, Glioma,
Liver, MEF, MESC,
Spleen_B_cell,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
Johnstone2016
3030863 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
532689 30

CTG...

LER...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
B_cell, BMDC, E14,
MEF, R1E, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

73256 ENSMUST00000149808 Ucp2-207 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
strong 6 sORFs_org_Mouse
533132 90

TTG...

LKN...

TTG ncRNA
sORF
Alternative
Upstream
B_cell, BMDC, E14,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
234323 33

GTG...

VFS...

GTG sORF
Upstream
ncRNA
3T3, B_cell, BMDC,
Brain, E14, MEF,
Neutrophil, R1E, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
13 sORFs_org_Mouse
77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
530905 30

ATG...

MPL...

ATG Alternative
InCDS
Overlapping
sORF
MEF, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
844957 78

TTG...

LAS...

TTG ncRNA
sORF
B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1472579 ENSMUST00000151221 Ucp2-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
752736 93

CTG...

LGQ...

CTG sORF
Alternative
InCDS
Overlapping
B_cell, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
845207 99

GTG...

VKF...

GTG ncRNA
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1097790 54

TTG...

LPI...

TTG sORF
Upstream
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
531168 30

CTG...

LLM...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
B_cell, BMDC, E14,
MEF, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

73256 ENSMUST00000149808 Ucp2-207 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
594639 147

TTG...

LAS...

TTG ncRNA
sORF
Intronic
B_cell, Liver, Brain,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1024495 ENSMUST00000126381 Ucp2-201 retained_intron Ribo-seq
1 sORFs_org_Mouse
416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1103315 111

TTG...

LKN...

TTG Alternative
sORF
Upstream
R1E, v6-5, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
77649 141

CTG...

LRN...

CTG sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
13 sORFs_org_Mouse
913277 81

AGG...

RPQ...

AGG sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
914461 66

AAG...

KLD...

AAG sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
426532 111

CTG...

LCP...

CTG InCDS
Overlapping
sORF
BMDC, E14, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
912902 87

AAG...

KNE...

AAG sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

416122 ENSMUST00000153287 Ucp2-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
912341 102

ACG...

TRY...

ACG ncRNA
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

73256 ENSMUST00000149808 Ucp2-207 processed_transcript Ribo-seq
1 sORFs_org_Mouse
535015 42

ATG...

MLP...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
Glioma, Liver, MEF,
MESC, Spleen_B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
Johnstone2016
77234 ENSMUST00000133498 Ucp2-205 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
77739 66

CTG...

LRS...

CTG sORF
MEF, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

72313 ENSMUST00000207748 Ucp2-210 protein_coding Ribo-seq
2 sORFs_org_Mouse
426142 123

CTG...

LPW...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
534357 111

CTG...

LSV...

CTG Alternative
sORF
Upstream
ncRNA
BMDC, MEF, Spleen_B_cell,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
841333 108

TTG...

LKV...

TTG Alternative
Overlapping
sORF
Upstream
ncRNA
E14, Neutrophil, v6-5,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1250417 36

AGG...

RGS...

AGG sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
77382 150

CTG...

LHS...

CTG Alternative
sORF
Upstream
ncRNA
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, v6-5, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
15 sORFs_org_Mouse
77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
3 sORFs_org_Mouse
843166 102

CTG...

LVT...

CTG ncRNA
sORF
B_cell, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

73256 ENSMUST00000149808 Ucp2-207 processed_transcript Ribo-seq
2 sORFs_org_Mouse
426353 33

CTG...

LER...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, E14, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
77442 60

CTG...

LVT...

CTG ncRNA
sORF
B_cell, BMDC, Brain,
E14, Liver, Neutrophil,
R1E, Spleen_B_cell, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

73256 ENSMUST00000149808 Ucp2-207 processed_transcript Ribo-seq
10 sORFs_org_Mouse
78140 189

GTG...

VTV...

GTG sORF
BMDC, Brain, E14,
MEF, Neutrophil, R1E,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

72955 ENSMUST00000129324 Ucp2-203 protein_coding Ribo-seq
8 sORFs_org_Mouse
424619 39

TTG...

LPV...

TTG Alternative
InCDS
Overlapping
sORF
E14, MEF, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
426604 117

CTG...

LSV...

CTG Alternative
sORF
Upstream
B_cell, BMDC, MEF,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
913105 132

ATA...

IHE...

ATA ncRNA
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

73256 ENSMUST00000149808 Ucp2-207 processed_transcript Ribo-seq
1 sORFs_org_Mouse
844608 120

CTG...

LVA...

CTG ncRNA
sORF
BMDC, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1472579 ENSMUST00000151221 Ucp2-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
77073 ENSMUST00000207890 Ucp2-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
426079 99

GTG...

VSS...

GTG Alternative
sORF
Upstream
B_cell, BMDC, MEF,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4549 ENSMUST00000126534 Ucp2-202 protein_coding Ribo-seq
6 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5