Transcript 43906 | MetamORF

Transcript

ID CARD

MetamORF ID

43906

ENSMUST00000116365

Name

Dnajc5-204

Strand

Biotype

nonsense_mediated_decay

Start-end positions

181520526-181552249

CDS Start-stop positions

181546382-181548936

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:13002

Aliases

2610314I24Rik,
AU018536, Csp, Dnajc5,
ENSMUSG00000000826, MGI:892995, NCBI:13002,
OFF:Dnajc5

Chr 2

ORFs

52 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
45772	120	CTG ...	LGL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Neutrophil, Testis
103827	69	GTG ...	VLL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	NMD sORF Upstream	BMDC, Neutrophil
98796	90	ATG ...	MAR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, v6-5
115833	99	ATG ...	MTS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, v6-5
95832	72	CTG ...	LPT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF Upstream	Brain, MEF, Neutrophil
964438	39	ACG ...	TAV ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	NMD sORF Upstream	BMDC
810284	39	ATG ...	MTL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil
94515	39	ATG ...	MNQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, MEF
109744	99	CTG ...	LRV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF
97894	93	GTG ...	VRR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, Neutrophil
43905	165	CTG ...	LTD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Neutrophil, Testis, v6-5
112064	225	GTG ...	VPV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
103067	30	CTG ...	LLL ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, NSC, v6-5
116224	75	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
93494	42	ATG ...	MIS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain, Neutrophil, NSC
94962	60	CTG ...	LIT ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF, v6-5
730002	66	TTG ...	LLP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	NMD sORF Upstream	3T3, BMDC, Neutrophil
98637	123	GTG ...	VGN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
96145	264	CTG ...	LFV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative CDS NMD sORF	Brain, Neutrophil
1053846	216	TTG ...	LCC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative CDS NMD sORF	Neutrophil
93776	66	TTG ...	LDW ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil, NSC
117442	192	TTG ...	LLF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, v6-5
93453	72	ATG ...	MWR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, v6-5
1641555	30	GTG ...	VVA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
97183	36	CTG ...	LLL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, NSC
116555	57	TTG ...	LGR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, v6-5
48383	246	CTG ...	LKY ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Testis, v6-5
102868	36	CTG ...	LLL ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, NSC, v6-5
113848	183	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, v6-5
100446	72	ATG ...	MFL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, Neutrophil, NSC
47707	48	CTG ...	LTA ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, MEF, Neutrophil, Testis
116826	99	TTG ...	LCD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
965738	42	GTG ...	VPT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
104974	51	ATG ...	MQP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Neutrophil, NSC
103853	30	CTG ...	LWE ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, NSC
497621	144	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Neutrophil
112932	189	TTG ...	LFV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, v6-5
811281	90	CTG ...	LPR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC, Neutrophil
116301	33	CTG ...	LLW ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, NSC
107088	45	CTG ...	LQT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF
101201	63	CTG ...	LTP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
47943	252	CTG ...	LAL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, Testis, v6-5
94743	39	CTG ...	LLL ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, NSC, v6-5
104966	54	TTG ...	LWP ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, v6-5
1641174	36	GTG ...	VFV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
47440	48	CTG ...	LDK ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
15630	72	CTG ...	LTR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF
107299	66	CTG ...	LKT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
966963	279	GTG ...	VRV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
497805	153	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Neutrophil
493268	159	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Neutrophil
46416	108	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil, Testis

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