Transcript 4240 | MetamORF

Transcript

ID CARD

MetamORF ID

4240

ENSMUST00000032998

Name

Rps3-201

Strand

Biotype

protein_coding

Start-end positions

99477896-99483738

CDS Start-stop positions

99479277-99483621

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:27050

Aliases

D7Ertd795e,
ENSMUSG00000030744, MGI:1350917, NCBI:27050,
OFF:Rps3, Rps3, Rs_3

Chr 7

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
75335	96	CTG ...	LRG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
77009	192	ATG ...	MQR ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, C2C12, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
78096	156	TTG ...	LPR ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
75287	33	TTG ...	LGR ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
4928	81	GTG ...	VET ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
4323	63	CTG ...	LLT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC, v6-5
4239	39	CTG ...	LCA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, NSC, Skin_tumor, v6-5
4637	72	GTG ...	VET ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
1024599	75	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil
4840	261	ATG ...	MYF ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, NSC, Skin_tumor
74389	42	GTG ...	VVR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, v6-5
4529	93	ATG ...	MVC ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
1027012	81	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil
3666	141	CTG ...	LLW ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
77719	114	TTG ...	LRF ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
72055	30	ATG ...	MCS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, v6-5
4955	270	GTG ...	VTG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
75279	42	TTG ...	LEG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, MEF, Neutrophil
1068233	33	TTG ...	LRF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil
4957	60	ATG ...	MST ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
4433	60	ATG ...	MAT ...	Ribo-seq	ATG	strong	9	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, E14, Liver, MEF, Neutrophil, NSC, v6-5
77148	48	CTG ...	LCA ...	Ribo-seq	CTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
72709	39	ATG ...	MFL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
3680	39	TTG ...	LSR ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
416135	111	ATG ...	MQR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, Neutrophil
77830	39	ATG ...	MCS ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1070643	123	ATG ...	MKS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Neutrophil, v6-5
5038	72	CTG ...	LLT ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
3760	45	TTG ...	LWC ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
3879	45	TTG ...	LKS ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, E14, Liver, MEF, Neutrophil, NSC, v6-5
77091	162	GTG ...	VPL ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
4495	66	GTG ...	VGP ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
3949	90	ATG ...	MNF ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, E14, Liver, MEF, Neutrophil, NSC, v6-5
77021	123	TTG ...	LEG ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, C2C12, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
4533	51	ATG ...	MST ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, NSC, v6-5
73182	33	TTG ...	LVP ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, v6-5
3942	90	GTG ...	VCF ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
4396	51	CTG ...	LEL ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC, v6-5
3895	36	CTG ...	LGS ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
4277	66	CTG ...	LKM ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC, v6-5

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