Gene NCBI:27050 | MetamORF

Gene

ID CARD

NCBI:27050

Aliases

D7Ertd795e
ENSMUSG00000030744, MGI:1350917, NCBI:27050
OFF:Rps3, Rps3, Rs_3

Chromosome

Transcripts

72 ORFs
5 known transcripts
144 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

77010

ENSMUST00000107096

Rps3-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
77719	114	TTG ...	LRF ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Testis
3680	39	TTG ...	LSR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
4433	60	ATG ...	MAT ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver
416135	111	ATG ...	MQR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
4533	51	ATG ...	MST ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF
3942	90	GTG ...	VCF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
3666	141	CTG ...	LLW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
75287	33	TTG ...	LGR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
77091	162	GTG ...	VPL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Testis
4396	51	CTG ...	LEL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver
1259880	183	AAG ...	KWP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
77021	123	TTG ...	LEG ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Testis
4840	261	ATG ...	MYF ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Testis
3879	45	TTG ...	LKS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
77009	192	ATG ...	MQR ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Testis
4323	63	CTG ...	LLT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF
4495	66	GTG ...	VGP ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
4955	270	GTG ...	VTG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Testis
3760	45	TTG ...	LWC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
77106	246	ATG ...	MNL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	CDS sORF	Brain, Testis
4277	66	CTG ...	LKM ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver
1024599	75	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
75279	42	TTG ...	LEG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
72709	39	ATG ...	MFL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC
4637	72	GTG ...	VET ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF
78096	156	TTG ...	LPR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Testis
3949	90	ATG ...	MNF ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC
1068233	33	TTG ...	LRF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
4529	93	ATG ...	MVC ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF

4240

ENSMUST00000032998

Rps3-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
75335	96	CTG ...	LRG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
77009	192	ATG ...	MQR ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, C2C12, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
78096	156	TTG ...	LPR ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
75287	33	TTG ...	LGR ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
4928	81	GTG ...	VET ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
4323	63	CTG ...	LLT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC, v6-5
4239	39	CTG ...	LCA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, NSC, Skin_tumor, v6-5
4637	72	GTG ...	VET ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
1024599	75	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil
4840	261	ATG ...	MYF ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, NSC, Skin_tumor
74389	42	GTG ...	VVR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, v6-5
4529	93	ATG ...	MVC ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
1027012	81	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil
3666	141	CTG ...	LLW ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
77719	114	TTG ...	LRF ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
72055	30	ATG ...	MCS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, v6-5
4955	270	GTG ...	VTG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
75279	42	TTG ...	LEG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, MEF, Neutrophil
1068233	33	TTG ...	LRF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil
4957	60	ATG ...	MST ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
4433	60	ATG ...	MAT ...	Ribo-seq	ATG	strong	9	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, E14, Liver, MEF, Neutrophil, NSC, v6-5
77148	48	CTG ...	LCA ...	Ribo-seq	CTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
72709	39	ATG ...	MFL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
3680	39	TTG ...	LSR ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
416135	111	ATG ...	MQR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, Neutrophil
77830	39	ATG ...	MCS ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1070643	123	ATG ...	MKS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Neutrophil, v6-5
5038	72	CTG ...	LLT ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
3760	45	TTG ...	LWC ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
3879	45	TTG ...	LKS ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, E14, Liver, MEF, Neutrophil, NSC, v6-5
77091	162	GTG ...	VPL ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
4495	66	GTG ...	VGP ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
3949	90	ATG ...	MNF ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, E14, Liver, MEF, Neutrophil, NSC, v6-5
77021	123	TTG ...	LEG ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, C2C12, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
4533	51	ATG ...	MST ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, NSC, v6-5
73182	33	TTG ...	LVP ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, v6-5
3942	90	GTG ...	VCF ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
4396	51	CTG ...	LEL ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC, v6-5
3895	36	CTG ...	LGS ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
4277	66	CTG ...	LKM ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC, v6-5

987445

ENSMUST00000128174

Rps3-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1253249	33	AGG ...	RTE ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
4277	66	CTG ...	LKM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
75279	42	TTG ...	LEG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
3879	45	TTG ...	LKS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
4495	66	GTG ...	VGP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
3942	90	GTG ...	VCF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
3949	90	ATG ...	MNF ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
3663	81	CTG ...	LAE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	E14, Liver
72709	39	ATG ...	MFL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
3760	45	TTG ...	LWC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
4433	60	ATG ...	MAT ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1257564	120	ATC ...	IFK ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1253959	171	ATT ...	IME ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1256079	102	AAG ...	KWP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
4396	51	CTG ...	LEL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
4170	105	CTG ...	LNE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Liver
1253826	90	ACG ...	TLQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
416135	111	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14

3664

ENSMUST00000128725

Rps3-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
75335	96	CTG ...	LRG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Testis
4170	105	CTG ...	LNE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
72381	114	TTG ...	LSS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Testis
1689551	78	TTG ...	LSK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
72224	177	GTG ...	VKI ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Testis
3799	183	GTG ...	VLR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
4356	135	GTG ...	VSG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Skin_tumor, Testis
4637	72	GTG ...	VET ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
4239	39	CTG ...	LCA ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Testis
4495	66	GTG ...	VGP ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
75027	81	CTG ...	LPT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Testis
73636	84	GTG ...	VAT ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Testis
73773	192	GTG ...	VLG ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Testis
4370	81	CTG ...	LMI ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
4117	177	TTG ...	LVI ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor, Testis
4433	60	ATG ...	MAT ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
75878	183	GTG ...	VSL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
226018	33	GTG ...	VRH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
4323	63	CTG ...	LLT ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
74769	111	GTG ...	VSI ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Testis
3814	138	GTG ...	VVS ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Skin_tumor, Testis
4529	93	ATG ...	MVC ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
76614	66	TTG ...	LRF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
4266	90	GTG ...	VDG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Skin_tumor, Testis
3663	81	CTG ...	LAE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
75279	42	TTG ...	LEG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, Testis
74022	189	CTG ...	LGI ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Testis
3666	141	CTG ...	LLW ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Skin_tumor, Testis
74382	102	GTG ...	VEP ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Testis
74389	42	GTG ...	VVR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Testis
72709	39	ATG ...	MFL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Testis
75287	33	TTG ...	LGR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Testis
3942	90	GTG ...	VCF ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
3879	45	TTG ...	LKS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
4364	69	CTG ...	LCA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Skin_tumor, Testis
72055	30	ATG ...	MCS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Testis
3760	45	TTG ...	LWC ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
4533	51	ATG ...	MST ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
3949	90	ATG ...	MNF ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
76497	123	CTG ...	LPD ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Testis
4396	51	CTG ...	LEL ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
73182	33	TTG ...	LVP ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Testis
75970	165	CTG ...	LPW ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Testis
1024599	75	TTG ...	LPR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
3895	36	CTG ...	LGS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
3680	39	TTG ...	LSR ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
4277	66	CTG ...	LKM ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis

3032442

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
424983	123	ATG ...	MKS ...	Predicted	ATG		1	Samandi2017	sORF
3949	90	ATG ...	MNF ...	Predicted	ATG		1	Samandi2017	sORF
1070643	123	ATG ...	MKS ...	Predicted	ATG		1	Samandi2017	sORF
77009	192	ATG ...	MQR ...	Predicted	ATG		1	Samandi2017	sORF

77746

ENSMUST00000208532

Rps3-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4433	60	ATG ...	MAT ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Spleen_B_cell
3949	90	ATG ...	MNF ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, R1E, Spleen_B_cell
424983	123	ATG ...	MKS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	CDS sORF	E14, MEF, R1E, Spleen_B_cell
77745	297	ATG ...	MVA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	CDS sORF	B_cell, R1E, Spleen_B_cell, Testis
4396	51	CTG ...	LEL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
4277	66	CTG ...	LKM ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E, Spleen_B_cell
1027012	81	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
3879	45	TTG ...	LKS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
75279	42	TTG ...	LEG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1024599	75	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

ORFs

72 ORFs
5 known transcripts
144 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

77719

114

TTG...

LRF...

TTG

InCDS
Overlapping
sORF
Alternative

3T3, BMDC, Brain,
E14, MEF, R1E,
Testis, B_cell, Liver,
Neutrophil, NSC, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		9	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		10	sORFs_org_Mouse

75335

CTG...

LRG...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

MEF, NSC, BMDC,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

1253249

AGG...

RTE...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

3680

TTG...

LSR...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

Brain, E14, Liver,
MEF, Neutrophil, NSC,
v6-5, BMDC, Skin_tumor,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse

4433

ATG...

MAT...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

BMDC, Brain, Liver,
3T3, B_cell, Spleen_B_cell,
MEF, Skin_tumor, Testis,
E14, C2C12, Neutrophil,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
77746	ENSMUST00000208532	Rps3-205	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	strong	5	sORFs_org_Mouse
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	strong	9	sORFs_org_Mouse

416135

111

ATG...

MQR...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

BMDC, Brain, C2C12,
Neutrophil, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

77009

192

ATG...

MQR...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
C2C12, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
v6-5, BMDC, E14,
Glioma, Liver, MESC,
Testis,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		12	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		8	sORFs_org_Mouse Johnstone2016
3032442	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

4533

ATG...

MST...

ATG

InCDS
Overlapping
sORF
Alternative
Intronic

BMDC, Brain, E14,
Liver, MEF, Neutrophil,
NSC, v6-5, Skin_tumor,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse

78096

156

TTG...

LPR...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
v6-5, BMDC, E14,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		12	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse

4170

105

CTG...

LNE...

CTG

Intronic
sORF

BMDC, Brain, MEF,
Skin_tumor, Testis, E14,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq		5	sORFs_org_Mouse
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

75287

TTG...

LGR...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, Liver, MEF,
Neutrophil, NSC, v6-5,
BMDC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

72381

114

TTG...

LSS...

TTG

Intronic
sORF

BMDC, Brain, MEF,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

1689551

TTG...

LSK...

TTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

4928

GTG...

VET...

GTG

Alternative
InCDS
Overlapping
sORF

B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		13	sORFs_org_Mouse

72224

177

GTG...

VKI...

GTG

Intronic
sORF

BMDC, MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

3942

GTG...

VCF...

GTG

InCDS
Overlapping
sORF
Intronic
Alternative

Brain, MEF, E14,
BMDC, Skin_tumor, Testis,
Liver, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse

3799

183

GTG...

VLR...

GTG

Intronic
sORF

BMDC, Brain, MEF,
Skin_tumor, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse

3666

141

CTG...

LLW...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

MEF, E14, NSC,
BMDC, Skin_tumor, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

4323

CTG...

LLT...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

Liver, MEF, Neutrophil,
NSC, v6-5, BMDC,
Brain, Skin_tumor, Testis,
E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse

4356

135

GTG...

VSG...

GTG

Intronic
sORF

BMDC, MEF, Skin_tumor,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

4277

CTG...

LKM...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, BMDC, Brain,
Liver, 3T3, B_cell,
R1E, Spleen_B_cell, MEF,
Neutrophil, NSC, v6-5,
Skin_tumor, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
77746	ENSMUST00000208532	Rps3-205	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	weak	6	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse

75279

TTG...

LEG...

TTG

Intronic
sORF
InCDS
Overlapping
Alternative

E14, BMDC, Testis,
C2C12, MEF, Neutrophil,
Brain, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
77746	ENSMUST00000208532	Rps3-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

77091

162

GTG...

VPL...

GTG

InCDS
Overlapping
sORF
Alternative

BMDC, Brain, E14,
MEF, Testis, 3T3,
B_cell, Neutrophil, NSC,
R1E, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		11	sORFs_org_Mouse

4239

CTG...

LCA...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

Neutrophil, NSC, Skin_tumor,
v6-5, BMDC, Brain,
MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse

4637

GTG...

VET...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping

BMDC, Brain, MEF,
Skin_tumor, Testis, E14,
Neutrophil, NSC, v6-5,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	strong	5	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

4495

GTG...

VGP...

GTG

Intronic
sORF
InCDS
Overlapping
Alternative

BMDC, Brain, MEF,
Skin_tumor, Testis, E14,
Neutrophil, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	strong	5	sORFs_org_Mouse
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	strong	6	sORFs_org_Mouse

75027

CTG...

LPT...

CTG

Intronic
sORF

BMDC, Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

1024599

TTG...

LPR...

TTG

InCDS
Overlapping
sORF
Alternative
Intronic

Neutrophil, Brain, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
77746	ENSMUST00000208532	Rps3-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

73636

GTG...

VAT...

GTG

Intronic
sORF

BMDC, MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

73773

192

GTG...

VLG...

GTG

Intronic
sORF

BMDC, MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

4840

261

ATG...

MYF...

ATG

Alternative
InCDS
Overlapping
sORF

B_cell, MEF, NSC,
Skin_tumor, Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

424983

123

ATG...

MKS...

ATG

sORF
CDS

E14, MEF,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3032442	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
77746	ENSMUST00000208532	Rps3-205	protein_coding	Ribo-seq		4	sORFs_org_Mouse

74389

GTG...

VVR...

GTG

Alternative
InCDS
Overlapping
sORF
Intronic

MEF, Neutrophil, v6-5,
BMDC, Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

4396

CTG...

LEL...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

Brain, E14, Liver,
3T3, B_cell, MEF,
Neutrophil, NSC, v6-5,
BMDC, Skin_tumor, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
77746	ENSMUST00000208532	Rps3-205	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	strong	7	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	strong	5	sORFs_org_Mouse

4529

ATG...

MVC...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, Liver, MEF,
Neutrophil, NSC, v6-5,
BMDC, Brain, Skin_tumor,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	strong	7	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	strong	5	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

1027012

GTG...

VPL...

GTG

InCDS
Overlapping
sORF
Alternative

Neutrophil, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
77746	ENSMUST00000208532	Rps3-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

3949

ATG...

MNF...

ATG

sORF
Alternative
InCDS
Overlapping
Intronic

3T3, B_cell,
MEF, R1E, Spleen_B_cell,
E14, C2C12, Liver,
Neutrophil, NSC, v6-5,
BMDC, Brain, Glioma,
MESC, Skin_tumor, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3032442	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
77746	ENSMUST00000208532	Rps3-205	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse Johnstone2016
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse

3879

TTG...

LKS...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, Brain, Liver,
C2C12, MEF, Neutrophil,
NSC, v6-5, BMDC,
Skin_tumor, Testis, 3T3,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	moderate	8	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
77746	ENSMUST00000208532	Rps3-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

4370

CTG...

LMI...

CTG

Intronic
sORF

BMDC, Brain, MEF,
Skin_tumor, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse

1259880

183

AAG...

KWP...

AAG

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

4117

177

TTG...

LVI...

TTG

Intronic
sORF

MEF, Skin_tumor, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

75878

183

GTG...

VSL...

GTG

Intronic
sORF

MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

77021

123

TTG...

LEG...

TTG

InCDS
Overlapping
sORF
Alternative

BMDC, Brain, E14,
MEF, Testis, 3T3,
B_cell, C2C12, Liver,
Neutrophil, NSC, R1E,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		13	sORFs_org_Mouse

226018

GTG...

VRH...

GTG

Intronic
sORF

BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

74769

111

GTG...

VSI...

GTG

Intronic
sORF

BMDC, Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse

3814

138

GTG...

VVS...

GTG

Intronic
sORF

BMDC, MEF, Skin_tumor,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	strong	4	sORFs_org_Mouse

3663

CTG...

LAE...

CTG

Intronic
sORF

E14, Liver, BMDC,
Brain, MEF, Skin_tumor,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq		5	sORFs_org_Mouse

72055

ATG...

MCS...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

Neutrophil, v6-5, BMDC,
MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

72709

ATG...

MFL...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, Liver, MEF,
Neutrophil, NSC, v6-5,
BMDC, Testis, Glioma,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse Johnstone2016

4955

270

GTG...

VTG...

GTG

Alternative
InCDS
Overlapping
sORF

MEF, Skin_tumor, Brain,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

76614

TTG...

LRF...

TTG

Intronic
sORF

MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

4266

GTG...

VDG...

GTG

Intronic
sORF

BMDC, MEF, Skin_tumor,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

3760

TTG...

LWC...

TTG

Intronic
sORF
InCDS
Overlapping
Alternative

E14, Brain, MEF,
Liver, Neutrophil, NSC,
v6-5, BMDC, Skin_tumor,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse

1068233

TTG...

LRF...

TTG

InCDS
Overlapping
sORF
Alternative

Neutrophil, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

74022

189

CTG...

LGI...

CTG

Intronic
sORF

BMDC, MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

4957

ATG...

MST...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		13	sORFs_org_Mouse

77745

297

ATG...

MVA...

ATG

CDS
sORF

B_cell, R1E, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
77746	ENSMUST00000208532	Rps3-205	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1257564

120

ATC...

IFK...

ATC

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1253959

171

ATT...

IME...

ATT

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

1070643

123

ATG...

MKS...

ATG

sORF
Alternative
Downstream
Overlapping

Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3032442	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

77148

CTG...

LCA...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		17	sORFs_org_Mouse

1256079

102

AAG...

KWP...

AAG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

77106

246

ATG...

MNL...

ATG

CDS
sORF

Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
77010	ENSMUST00000107096	Rps3-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

74382

102

GTG...

VEP...

GTG

Intronic
sORF

BMDC, Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

77830

ATG...

MCS...

ATG

Alternative
InCDS
Overlapping
sORF

B_cell, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		16	sORFs_org_Mouse

5038

CTG...

LLT...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, Brain, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq		13	sORFs_org_Mouse

4364

CTG...

LCA...

CTG

Intronic
sORF

BMDC, Skin_tumor, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

1253826

ACG...

TLQ...

ACG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987445	ENSMUST00000128174	Rps3-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

73182

TTG...

LVP...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

MEF, Neutrophil, NSC,
v6-5, BMDC, Brain,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	strong	5	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	strong	4	sORFs_org_Mouse

3895

CTG...

LGS...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, Liver, MEF,
Neutrophil, NSC, v6-5,
BMDC, Brain, Skin_tumor,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4240	ENSMUST00000032998	Rps3-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse

76497

123

CTG...

LPD...

CTG

Intronic
sORF

BMDC, Brain, MEF,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse

75970

165

CTG...

LPW...

CTG

Intronic
sORF

BMDC, Brain, MEF,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3664	ENSMUST00000128725	Rps3-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

Export data