Transcript 26236 | MetamORF

Transcript

ID CARD

MetamORF ID

26236

ENSMUST00000021676

Name

Erg28-201

Strand

Biotype

protein_coding

Start-end positions

85815448-85824522

CDS Start-stop positions

85816114-85822220

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:58520

Aliases

0610007P14Rik,
1190004E09Rik, AU019315, C77855,
ENSMUSG00000021252, Erg28, MGI:1915571,
NCBI:58520, OFF:Erg28, ORF11

Chr 12

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
329947	273	GTG ...	VDP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	CDS sORF	Brain, Liver, R1E
329154	129	TTG ...	LTS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, R1E, Spleen_B_cell
325869	30	TTG ...	LGS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, R1E, Spleen_B_cell
327973	30	TTG ...	LRM ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, Liver, MEF, R1E
324864	48	TTG ...	LYL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell
329245	282	CTG ...	LRD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	CDS sORF	Brain, Liver, R1E
329698	213	CTG ...	LFP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	CDS sORF	3T3, B_cell, Brain, Liver, R1E
324266	105	GTG ...	VDI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
329094	135	GTG ...	VPL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, R1E, Spleen_B_cell
329893	291	GTG ...	VNG ...	Ribo-seq	GTG		13	sORFs_org_Mouse	CDS sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
25795	45	CTG ...	LDA ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
26235	249	CTG ...	LDR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E, Spleen_B_cell, Testis
24760	108	CTG ...	LAG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Spleen_B_cell
25896	150	TTG ...	LEG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	R1E, Spleen_B_cell
328087	42	TTG ...	LEQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell
328884	288	GTG ...	VYL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	CDS sORF	Brain, Liver, R1E
324562	51	ATG ...	MAS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
322283	39	ATG ...	MCY ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell
1346100	276	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14

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