Transcript 8156 | MetamORF

Transcript

ID CARD

MetamORF ID

8156

ENSMUST00000020358

Name

Rab1a-201

Strand

Biotype

protein_coding

Start-end positions

20201432-20226856

CDS Start-stop positions

20201639-20224845

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:19324

Aliases

ENSMUSG00000020149,
Gtbp, MGI:97842, mKIAA3012,
NCBI:19324, OFF:Rab1a, Rab-1,
Rab1, Rab1a, Ypt1

Chr 11

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9198	111	TTG ...	LAI ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell
8641	30	TTG ...	LVW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, Skin_tumor, Spleen_B_cell
18949	42	CTG ...	LGL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
18933	63	TTG ...	LGR ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
8572	51	TTG ...	LAI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Skin_tumor, Spleen_B_cell
9175	102	CTG ...	LGL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell
293171	72	GTG ...	VEA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	Liver, R1E
937585	105	ATT ...	ILG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
90887	48	TTG ...	LEF ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell
312012	126	GTG ...	VVP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Downstream Overlapping sORF	E14, Liver, R1E
931355	54	ATT ...	IPL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
20175	45	GTG ...	VAA ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver, R1E, Spleen_B_cell, Testis
1292483	39	ATC ...	IAT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
17453	36	TTG ...	LES ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
21945	48	GTG ...	VVA ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver, R1E, Spleen_B_cell, Testis
1293090	111	ATT ...	IPP ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
8882	63	ATG ...	MIR ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, Skin_tumor, Spleen_B_cell
304812	45	GTG ...	VEA ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	sORF Upstream	3T3, Brain, E14, MEF, R1E, Spleen_B_cell
1843171	48	CTG ...	LNP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	R1E
18633	165	CTG ...	LRL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, E14, Liver, R1E
1292106	45	ATT ...	ICR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
935703	126	ACG ...	TFA ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1292744	33	ACG ...	TPV ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
310918	54	TTG ...	LCS ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, R1E, Spleen_B_cell
294343	129	CTG ...	LVV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	R1E
8155	84	GTG ...	VGH ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, Neutrophil, Skin_tumor, Spleen_B_cell
305586	42	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
312294	108	ATG ...	MLK ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Downstream Overlapping sORF	Brain, E14, Liver, R1E
91669	135	GTG ...	VGS ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
8964	33	GTG ...	VAA ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Skin_tumor, Spleen_B_cell
1287552	30	AAG ...	KRS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
937942	36	ATC ...	IPN ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
91571	90	GTG ...	VAR ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Liver, R1E, Spleen_B_cell, Testis
18104	78	CTG ...	LWR ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver, MEF, R1E, Spleen_B_cell, Testis
931896	36	ATC ...	ITE ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
20568	171	GTG ...	VAA ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
21713	141	CTG ...	LEL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Downstream Overlapping sORF	E14, Liver, R1E
9588	96	TTG ...	LES ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell
91844	60	TTG ...	LQI ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, MEF, Neutrophil, R1E, Spleen_B_cell
91452	51	CTG ...	LRQ ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
295995	123	GTG ...	VPR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	Liver, R1E

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