Transcript 1457056

Transcript

ID CARD

MetamORF ID

1457056

ENSMUST00000148733

Name

Coro1b-209

Strand

Biotype

retained_intron

Start-end positions

4148632-4149634

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGA ...

Genome browsers

UCSC

Gene

NCBI:23789

Aliases

Coro1b,
ENSMUSG00000024835, MGI:1345963, NCBI:23789,
OFF:Coro1b

Chr 19

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
401441	111	ATG ...	MYS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
962668	75	ATG ...	MRT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
404177	135	TTG ...	LCG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
403606	165	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
805175	180	CTG ...	LIQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
804376	201	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
804627	171	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
858346	87	ATG ...	MTS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
1458007	210	ATG ...	MLC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1457524	231	CTG ...	LDQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC

Export data