Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:23789

Aliases

Coro1b
ENSMUSG00000024835, MGI:1345963, NCBI:23789
OFF:Coro1b

Chromosome

19

Transcripts

76 ORFs
9 known transcripts
134 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

41958 ENSMUST00000134194 Coro1b-203 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1007505 180

GTG ...

VGT ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, Neutrophil
41957 96

GTG ...

VFT ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Neutrophil, Testis
1007106 162

CTG ...

LYR ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Neutrophil
14417 30

GTG ...

VDQ ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
NSC
723242 93

GTG ...

VGT ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
NSC
1007749 144

TTG ...

LHP ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Neutrophil
403606 165

CTG ...

LPS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
NSC
491059 117

GTG ...

VGT ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
858346 87

ATG ...

MTS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
NSC
1007705 153

CTG ...

LDS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Neutrophil
1050989 90

GTG ...

VTM ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Neutrophil
1007202 120

GTG ...

VSW ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Neutrophil
408001 33

GTG ...

VNG ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Liver, MEF, Neutrophil
1457668 84

ATG ...

MWY ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1633674 66

ATG ...

MWA ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1635233 57

CTG ...

LQR ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
42429 198

GTG ...

VVL ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
Neutrophil, Testis
41919 ENSMUST00000135498 Coro1b-204 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

406754 102

TTG ...

LRS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
1633496 48

CTG ...

LTQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
42356 96

CTG ...

LNT ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
Neutrophil, Testis, v6-5
41918 36

TTG ...

LEV ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
Testis, v6-5
1635545 75

CTG ...

LTS ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
MEF
406915 99

CTG ...

LDS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
489531 60

ATG ...

MIC ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
724446 42

ATG ...

MTQ ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
42463 108

CTG ...

LQE ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil, Testis
487675 84

GTG ...

VRS ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF
1457572 60

ATG ...

MTP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
718350 63

ATG ...

MGL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
42018 90

CTG ...

LHE ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Neutrophil, Testis
14000 ENSMUST00000140419 Coro1b-205 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

718350 63

ATG ...

MGL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
42356 96

CTG ...

LNT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Spleen_B_cell
41918 36

TTG ...

LEV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
408001 33

GTG ...

VNG ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
406915 99

CTG ...

LDS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
1457283 39

TTG ...

LRS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
721512 81

ATG ...

MAA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
14104 36

TTG ...

LQG ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Skin_tumor
42463 108

CTG ...

LQE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
724446 42

ATG ...

MTQ ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
488644 39

CTG ...

LTG ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Spleen_B_cell
406754 102

TTG ...

LRS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain
13999 45

TTG ...

LLS ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Skin_tumor
14418 ENSMUST00000143613 Coro1b-207 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1458007 210

ATG ...

MLC ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
723242 93

GTG ...

VGT ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
962829 138

AAG ...

KLC ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
401441 111

ATG ...

MYS ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Liver
14451 36

TTG ...

LPV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, Skin_tumor
804376 201

GTG ...

VSL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
804627 171

GTG ...

VSL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver
962668 75

ATG ...

MRT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain
404177 135

TTG ...

LCG ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver
805175 180

CTG ...

LIQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver
403606 165

CTG ...

LPS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver
858346 87

ATG ...

MTS ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Liver
14417 30

GTG ...

VDQ ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, Skin_tumor
14576 45

ATG ...

MKS ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, Skin_tumor
2987759 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

491091 135

ATG ...

MAD ...

Predicted
ATG

1 Samandi2017
    sORF
401441 111

ATG ...

MYS ...

Predicted
ATG

1 Samandi2017
    sORF
726756 120

ATG ...

MGL ...

Predicted
ATG

1 Samandi2017
    sORF
92101 ENSMUST00000008893 Coro1b-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

92100 195

GTG ...

VNG ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain
726756 120

ATG ...

MGL ...

Ribo-seq
ATG

4 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Glioma, Liver, MEF,
MESC
410048 159

TTG ...

LRS ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
v6-5
1457668 84

ATG ...

MWY ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
1635233 57

CTG ...

LQR ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1160809 51

GTG ...

VKL ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, v6-5
1204955 126

ACG ...

TCY ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1635545 75

CTG ...

LTS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
724446 42

ATG ...

MTQ ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
404177 135

TTG ...

LCG ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver
858346 87

ATG ...

MTS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
491091 135

ATG ...

MAD ...

Ribo-seq
ATG

5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
Spleen_B_cell, v6-5
963524 129

ATT ...

IQA ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
401441 111

ATG ...

MYS ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
406754 102

TTG ...

LRS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
961617 63

AGG ...

RMI ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1050989 90

GTG ...

VTM ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
489531 60

ATG ...

MIC ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
724972 99

ATG ...

MTQ ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
v6-5
961136 45

ATT ...

IYQ ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
960912 72

ATT ...

IQA ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1160875 45

CTG ...

LAP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
961071 57

ATT ...

IPA ...

Ribo-seq
ATT

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1633496 48

CTG ...

LTQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1160138 102

CTG ...

LFW ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1204996 108

AAG ...

KNP ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1635727 36

CTG ...

LGL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
408001 33

GTG ...

VNG ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
1680010 69

ATG ...

MKS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
14104 36

TTG ...

LQG ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
726439 105

CTG ...

LPV ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
1680116 60

TTG ...

LPV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
491059 117

GTG ...

VGT ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, NSC,
Spleen_B_cell, v6-5
1680120 72

ATG ...

MMK ...

Ribo-seq
ATG

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1160306 45

TTG ...

LPG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, v6-5
1633674 66

ATG ...

MWA ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
963660 57

ATG ...

MSP ...

Ribo-seq
ATG

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC
1205371 54

GTG ...

VDQ ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
804103 ENSMUST00000142878 Coro1b-206 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

804376 201

GTG ...

VSL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
858346 87

ATG ...

MTS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
805175 180

CTG ...

LIQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
962668 75

ATG ...

MRT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
404177 135

TTG ...

LCG ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, MEF
962829 138

AAG ...

KLC ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
804627 171

GTG ...

VSL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, MEF
401441 111

ATG ...

MYS ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, E14, MEF
403606 165

CTG ...

LPS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, MEF
723243 ENSMUST00000123874 Coro1b-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

858346 87

ATG ...

MTS ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    sORF
Brain, E14, MEF
723696 96

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
3T3
404177 135

TTG ...

LCG ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    sORF
E14, MEF, NSC
1159393 78

CTG ...

LFW ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
MEF, v6-5
14451 36

TTG ...

LPV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
MEF, v6-5
1159808 66

TTG ...

LTG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
MEF, v6-5
401441 111

ATG ...

MYS ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    sORF
E14, MEF, NSC
723242 93

GTG ...

VGT ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    sORF
3T3, MEF, v6-5
723606 117

TTG ...

LTR ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    sORF
3T3, MEF, NSC
962668 75

ATG ...

MRT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    sORF
E14, MEF
487676 ENSMUST00000148189 Coro1b-208 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

41918 36

TTG ...

LEV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1200617 63

ATC ...

IRQ ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1457572 60

ATG ...

MTP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
487675 84

GTG ...

VRS ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Spleen_B_cell
1457283 39

TTG ...

LRS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
42018 90

CTG ...

LHE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
42356 96

CTG ...

LNT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, MEF
1201804 102

AAG ...

KNP ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
489531 60

ATG ...

MIC ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
E14, Spleen_B_cell
1202803 42

AGG ...

RGL ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1457056 ENSMUST00000148733 Coro1b-209 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

401441 111

ATG ...

MYS ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, R1E
962668 75

ATG ...

MRT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, R1E
404177 135

TTG ...

LCG ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, R1E
403606 165

CTG ...

LPS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
805175 180

CTG ...

LIQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
804376 201

GTG ...

VSL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
804627 171

GTG ...

VSL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
858346 87

ATG ...

MTS ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, R1E
1458007 210

ATG ...

MLC ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1457524 231

CTG ...

LDQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC

ORFs

76 ORFs
9 known transcripts
134 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1007505 180

GTG...

VGT...

GTG ncRNA
sORF
Brain, MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
3 sORFs_org_Mouse
406754 102

TTG...

LRS...

TTG Intronic
sORF
InCDS
Overlapping
3T3, BMDC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41919 ENSMUST00000135498 Coro1b-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
14000 ENSMUST00000140419 Coro1b-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
718350 63

ATG...

MGL...

ATG Intronic
sORF
Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14000 ENSMUST00000140419 Coro1b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
41919 ENSMUST00000135498 Coro1b-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1458007 210

ATG...

MLC...

ATG Intronic
sORF
Brain, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
1457056 ENSMUST00000148733 Coro1b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
491091 135

ATG...

MAD...

ATG sORF
Alternative
InCDS
Overlapping
3T3, E14,
Glioma, Liver, MEF,
MESC, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2987759 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
Johnstone2016
92100 195

GTG...

VNG...

GTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
804376 201

GTG...

VSL...

GTG Intronic
sORF
B_cell, Brain, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

804103 ENSMUST00000142878 Coro1b-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
1457056 ENSMUST00000148733 Coro1b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
723242 93

GTG...

VGT...

GTG Intronic
sORF
ncRNA
R1E, NSC, 3T3,
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
723243 ENSMUST00000123874 Coro1b-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
858346 87

ATG...

MTS...

ATG sORF
Intronic
Alternative
InCDS
Overlapping
ncRNA
Brain, E14, MEF,
Liver, NSC, BMDC,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

723243 ENSMUST00000123874 Coro1b-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
804103 ENSMUST00000142878 Coro1b-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1457056 ENSMUST00000148733 Coro1b-209 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
41957 96

GTG...

VFT...

GTG ncRNA
sORF
Brain, Neutrophil, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
3 sORFs_org_Mouse
41918 36

TTG...

LEV...

TTG Intronic
sORF
BMDC, Brain, 3T3,
E14, MEF, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

487676 ENSMUST00000148189 Coro1b-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
14000 ENSMUST00000140419 Coro1b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
41919 ENSMUST00000135498 Coro1b-204 retained_intron Ribo-seq
5 sORFs_org_Mouse
42356 96

CTG...

LNT...

CTG Intronic
sORF
Brain, Spleen_B_cell, 3T3,
E14, MEF, Neutrophil,
Testis, v6-5, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14000 ENSMUST00000140419 Coro1b-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
41919 ENSMUST00000135498 Coro1b-204 retained_intron Ribo-seq
6 sORFs_org_Mouse
487676 ENSMUST00000148189 Coro1b-208 retained_intron Ribo-seq
2 sORFs_org_Mouse
1007106 162

CTG...

LYR...

CTG ncRNA
sORF
Brain, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
2 sORFs_org_Mouse
723696 96

CTG...

LLP...

CTG sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

723243 ENSMUST00000123874 Coro1b-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
962829 138

AAG...

KLC...

AAG Intronic
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
804103 ENSMUST00000142878 Coro1b-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
726756 120

ATG...

MGL...

ATG InCDS
Overlapping
sORF
3T3, BMDC, Brain,
Glioma, Liver, MEF,
MESC,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
Johnstone2016
2987759 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
410048 159

TTG...

LRS...

TTG InCDS
Overlapping
sORF
3T3, BMDC, Brain,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
1457668 84

ATG...

MWY...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
BMDC, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
1635233 57

CTG...

LQR...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
1633496 48

CTG...

LTQ...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41919 ENSMUST00000135498 Coro1b-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
404177 135

TTG...

LCG...

TTG sORF
Alternative
InCDS
Overlapping
Intronic
E14, MEF, NSC,
Brain, Liver, B_cell,
BMDC, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

723243 ENSMUST00000123874 Coro1b-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
804103 ENSMUST00000142878 Coro1b-206 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
1457056 ENSMUST00000148733 Coro1b-209 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
1200617 63

ATC...

IRQ...

ATC Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

487676 ENSMUST00000148189 Coro1b-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
401441 111

ATG...

MYS...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
BMDC, Brain, Liver,
R1E, Glioma, MEF,
MESC, E14, NSC,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
1457056 ENSMUST00000148733 Coro1b-209 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
Johnstone2016
723243 ENSMUST00000123874 Coro1b-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
2987759 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
804103 ENSMUST00000142878 Coro1b-206 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
1160809 51

GTG...

VKL...

GTG Alternative
InCDS
Overlapping
sORF
BMDC, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
14451 36

TTG...

LPV...

TTG Intronic
sORF
MEF, Skin_tumor, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
723243 ENSMUST00000123874 Coro1b-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1159393 78

CTG...

LFW...

CTG sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

723243 ENSMUST00000123874 Coro1b-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1204955 126

ACG...

TCY...

ACG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
14417 30

GTG...

VDQ...

GTG ncRNA
sORF
Intronic
NSC, MEF, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
1635545 75

CTG...

LTS...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
41919 ENSMUST00000135498 Coro1b-204 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
724446 42

ATG...

MTQ...

ATG InCDS
Overlapping
sORF
Intronic
BMDC, Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
14000 ENSMUST00000140419 Coro1b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
41919 ENSMUST00000135498 Coro1b-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1007749 144

TTG...

LHP...

TTG ncRNA
sORF
Brain, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
2 sORFs_org_Mouse
963524 129

ATT...

IQA...

ATT InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
403606 165

CTG...

LPS...

CTG ncRNA
sORF
Intronic
NSC, BMDC, Brain,
Liver, B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1457056 ENSMUST00000148733 Coro1b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
3 sORFs_org_Mouse
804103 ENSMUST00000142878 Coro1b-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
1457572 60

ATG...

MTP...

ATG Intronic
sORF
BMDC, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

487676 ENSMUST00000148189 Coro1b-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
41919 ENSMUST00000135498 Coro1b-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1159808 66

TTG...

LTG...

TTG sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

723243 ENSMUST00000123874 Coro1b-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
804627 171

GTG...

VSL...

GTG Intronic
sORF
Brain, Liver, B_cell,
MEF, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
804103 ENSMUST00000142878 Coro1b-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
1457056 ENSMUST00000148733 Coro1b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
962668 75

ATG...

MRT...

ATG Intronic
sORF
BMDC, Brain, E14,
R1E, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
804103 ENSMUST00000142878 Coro1b-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1457056 ENSMUST00000148733 Coro1b-209 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
723243 ENSMUST00000123874 Coro1b-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
805175 180

CTG...

LIQ...

CTG Intronic
sORF
B_cell, BMDC, Brain,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

804103 ENSMUST00000142878 Coro1b-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
1457056 ENSMUST00000148733 Coro1b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
961617 63

AGG...

RMI...

AGG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1050989 90

GTG...

VTM...

GTG Alternative
InCDS
Overlapping
sORF
ncRNA
BMDC, MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
moderate 3 sORFs_org_Mouse
489531 60

ATG...

MIC...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
Glioma, Liver, MEF,
MESC, E14, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
Johnstone2016
41919 ENSMUST00000135498 Coro1b-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
487676 ENSMUST00000148189 Coro1b-208 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
724972 99

ATG...

MTQ...

ATG InCDS
Overlapping
sORF
3T3, BMDC, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
491059 117

GTG...

VGT...

GTG ncRNA
sORF
Alternative
InCDS
Overlapping
MEF, BMDC, NSC,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
961136 45

ATT...

IYQ...

ATT InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1007705 153

CTG...

LDS...

CTG ncRNA
sORF
Brain, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
2 sORFs_org_Mouse
487675 84

GTG...

VRS...

GTG Intronic
sORF
BMDC, Spleen_B_cell, 3T3,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

487676 ENSMUST00000148189 Coro1b-208 retained_intron Ribo-seq
2 sORFs_org_Mouse
41919 ENSMUST00000135498 Coro1b-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
408001 33

GTG...

VNG...

GTG Intronic
sORF
Alternative
InCDS
Overlapping
ncRNA
3T3, Brain, Spleen_B_cell,
B_cell, MEF, Liver,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14000 ENSMUST00000140419 Coro1b-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
3 sORFs_org_Mouse
406915 99

CTG...

LDS...

CTG Intronic
sORF
Brain, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14000 ENSMUST00000140419 Coro1b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
41919 ENSMUST00000135498 Coro1b-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
960912 72

ATT...

IQA...

ATT InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
723606 117

TTG...

LTR...

TTG sORF
3T3, MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

723243 ENSMUST00000123874 Coro1b-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
1160875 45

CTG...

LAP...

CTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
961071 57

ATT...

IPA...

ATT Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1007202 120

GTG...

VSW...

GTG ncRNA
sORF
Brain, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1160138 102

CTG...

LFW...

CTG Alternative
InCDS
Overlapping
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1204996 108

AAG...

KNP...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1457283 39

TTG...

LRS...

TTG Intronic
sORF
BMDC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

487676 ENSMUST00000148189 Coro1b-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
14000 ENSMUST00000140419 Coro1b-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1635727 36

CTG...

LGL...

CTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
42018 90

CTG...

LHE...

CTG Intronic
sORF
BMDC, MEF, Neutrophil,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

487676 ENSMUST00000148189 Coro1b-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
41919 ENSMUST00000135498 Coro1b-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
721512 81

ATG...

MAA...

ATG Intronic
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14000 ENSMUST00000140419 Coro1b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1680010 69

ATG...

MKS...

ATG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
14104 36

TTG...

LQG...

TTG Intronic
sORF
Alternative
InCDS
Overlapping
3T3, Skin_tumor, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14000 ENSMUST00000140419 Coro1b-205 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
726439 105

CTG...

LPV...

CTG Alternative
InCDS
Overlapping
sORF
3T3, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
42463 108

CTG...

LQE...

CTG Intronic
sORF
Brain, Neutrophil, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14000 ENSMUST00000140419 Coro1b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
41919 ENSMUST00000135498 Coro1b-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
1680116 60

TTG...

LPV...

TTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1201804 102

AAG...

KNP...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

487676 ENSMUST00000148189 Coro1b-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
488644 39

CTG...

LTG...

CTG Intronic
sORF
3T3, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14000 ENSMUST00000140419 Coro1b-205 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
1680120 72

ATG...

MMK...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
Johnstone2016
1160306 45

TTG...

LPG...

TTG Alternative
InCDS
Overlapping
sORF
BMDC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1202803 42

AGG...

RGL...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

487676 ENSMUST00000148189 Coro1b-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
1633674 66

ATG...

MWA...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
13999 45

TTG...

LLS...

TTG Intronic
sORF
Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14000 ENSMUST00000140419 Coro1b-205 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1457524 231

CTG...

LDQ...

CTG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1457056 ENSMUST00000148733 Coro1b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
14576 45

ATG...

MKS...

ATG Intronic
sORF
MEF, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

14418 ENSMUST00000143613 Coro1b-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
963660 57

ATG...

MSP...

ATG Alternative
InCDS
Overlapping
sORF
BMDC, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
Johnstone2016
42429 198

GTG...

VVL...

GTG ncRNA
sORF
Brain, E14, MEF,
Neutrophil, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41958 ENSMUST00000134194 Coro1b-203 processed_transcript Ribo-seq
6 sORFs_org_Mouse
1205371 54

GTG...

VDQ...

GTG Alternative
InCDS
Overlapping
sORF
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92101 ENSMUST00000008893 Coro1b-201 protein_coding Ribo-seq
3 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5