Transcript 640870

Transcript

ID CARD

MetamORF ID

640870

ENSMUST00000134896

Name

Cnot8-204

Strand

Biotype

protein_coding

Start-end positions

58104366-58111369

CDS Start-stop positions

58109650-

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:69125

Aliases

1500015I04Rik,
1810022F04Rik, AA536816, AU015770,
AU043059, Cnot8, ENSMUSG00000020515,
MGI:1916375, NCBI:69125, OFF:Cnot8

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
20319	42	GTG ...	VAP ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, E14, MEF, R1E
307176	90	TTG ...	LFF ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, E14, R1E
1285306	54	AGG ...	RCL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14
294192	63	TTG ...	LRK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	B_cell, Brain, R1E
1287817	78	ATA ...	IVG ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF	E14
771538	105	TTG ...	LIF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	E14
311455	42	GTG ...	VLL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF	3T3, Brain, R1E
303246	36	TTG ...	LYG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	Brain, R1E
305345	39	GTG ...	VRL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, E14, R1E
657978	78	TTG ...	LLG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, B_cell
293945	33	TTG ...	LSS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	B_cell, Brain, R1E
293679	30	GTG ...	VPS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF	3T3, B_cell, MEF, R1E
305588	39	TTG ...	LLY ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	Brain, R1E
1289364	111	ATC ...	IKQ ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	sORF	E14
653728	60	TTG ...	LDP ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	sORF	3T3, B_cell, E14
453085	84	GTG ...	VRC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, R1E
651352	51	GTG ...	VWT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	3T3, B_cell
301227	72	TTG ...	LFV ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	sORF	3T3, B_cell, E14, MEF, R1E

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