Transcript 416827

Transcript

ID CARD

MetamORF ID

416827

ENSMUST00000006911

Name

Cdk4-201

Strand

Biotype

protein_coding

Start-end positions

127063534-127067920

CDS Start-stop positions

127064236-127067021

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:12567

Aliases

Cdk4,
Crk3, ENSMUSG00000006728, MGI:88357,
NCBI:12567, OFF:Cdk4

Chr 10

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
524113	108	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1057865	33	ATG ...	MGP ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
513425	138	CTG ...	LAS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
434542	30	ATG ...	MQT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
514617	60	CTG ...	LPG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	Brain, Liver, R1E, Spleen_B_cell
1106505	30	GTG ...	VRV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	E14, MEF, v6-5
1886429	48	CTG ...	LAA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	R1E
506513	60	ATG ...	MEE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
512648	96	ATG ...	MNP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
514412	114	CTG ...	LCL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E, Spleen_B_cell
1282913	45	AAG ...	KHL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
431556	108	CTG ...	LPL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
431480	84	CTG ...	LKL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
508429	123	CTG ...	LLR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, R1E, Spleen_B_cell
510894	165	TTG ...	LDC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
520816	42	GTG ...	VLL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
533666	63	GTG ...	VYG ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E, Spleen_B_cell
1109073	33	ATG ...	MVR ...	Predicted Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Mackowiak2015	sORF Upstream	MEF, v6-5
433372	75	GTG ...	VSV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
4314	54	GTG ...	VER ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
534426	78	TTG ...	LVS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
433367	78	CTG ...	LAR ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	sORF Upstream	Brain, Liver, R1E, Spleen_B_cell
429616	48	ATG ...	MSV ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
416826	36	ATG ...	MAP ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	sORF Upstream	Brain, C2C12, Liver, R1E, Spleen_B_cell
5374	42	CTG ...	LYL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
520782	48	CTG ...	LEG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
520762	51	CTG ...	LHC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell

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