Gene NCBI:12567 | MetamORF

Gene

ID CARD

NCBI:12567

Aliases

Cdk4
Crk3, ENSMUSG00000006728, MGI:88357
NCBI:12567, OFF:Cdk4

Chromosome

Transcripts

59 ORFs
7 known transcripts
128 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

4315

ENSMUST00000142558

Cdk4-208

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56577	165	GTG ...	VYK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14
1255354	147	ACG ...	TTG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
68773	114	GTG ...	VRV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil
68205	54	GTG ...	VAL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Neutrophil
1313879	207	CTG ...	LGK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF
1267669	156	ATT ...	IAS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1238531	168	ACG ...	TVY ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1475672	36	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
86600	120	CTG ...	LKP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Neutrophil
85902	198	GTG ...	VAE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, Neutrophil
1030586	93	GTG ...	VDM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1249134	147	ACG ...	TLW ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1057865	33	ATG ...	MGP ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC, Neutrophil
416826	36	ATG ...	MAP ...	Ribo-seq	ATG	moderate	1	Johnstone2016	NMD sORF Upstream	Glioma, Liver, MEF, MESC
5374	42	CTG ...	LYL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	MEF, Skin_tumor, v6-5
434542	30	ATG ...	MQT ...	Ribo-seq	ATG	weak	1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
1020273	207	CTG ...	LMD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
510894	165	TTG ...	LDC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
4314	54	GTG ...	VER ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Downstream NMD sORF	MEF, NSC, Skin_tumor, v6-5
1242419	132	AGG ...	RYL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
616171	138	GTG ...	VIV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, v6-5
512648	96	ATG ...	MNP ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
71332	153	GTG ...	VVT ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, Neutrophil, NSC, v6-5
66060	117	CTG ...	LQS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil, NSC, v6-5
73934	48	TTG ...	LLR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF
63421	99	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Neutrophil
1248659	111	AGG ...	RSL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
513425	138	CTG ...	LAS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
506513	60	ATG ...	MEE ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
429616	48	ATG ...	MSV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1029519	75	CTG ...	LAD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Neutrophil
559244	177	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
71961	159	CTG ...	LDF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, Neutrophil
61279	129	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC

416827

ENSMUST00000006911

Cdk4-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
524113	108	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1057865	33	ATG ...	MGP ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
513425	138	CTG ...	LAS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
434542	30	ATG ...	MQT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
514617	60	CTG ...	LPG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	Brain, Liver, R1E, Spleen_B_cell
1106505	30	GTG ...	VRV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	E14, MEF, v6-5
1886429	48	CTG ...	LAA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	R1E
506513	60	ATG ...	MEE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
512648	96	ATG ...	MNP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
514412	114	CTG ...	LCL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E, Spleen_B_cell
1282913	45	AAG ...	KHL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
431556	108	CTG ...	LPL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
431480	84	CTG ...	LKL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
508429	123	CTG ...	LLR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, R1E, Spleen_B_cell
510894	165	TTG ...	LDC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
520816	42	GTG ...	VLL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
533666	63	GTG ...	VYG ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E, Spleen_B_cell
1109073	33	ATG ...	MVR ...	Predicted Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Mackowiak2015	sORF Upstream	MEF, v6-5
433372	75	GTG ...	VSV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
4314	54	GTG ...	VER ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
534426	78	TTG ...	LVS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
433367	78	CTG ...	LAR ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	sORF Upstream	Brain, Liver, R1E, Spleen_B_cell
429616	48	ATG ...	MSV ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
416826	36	ATG ...	MAP ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	sORF Upstream	Brain, C2C12, Liver, R1E, Spleen_B_cell
5374	42	CTG ...	LYL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
520782	48	CTG ...	LEG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
520762	51	CTG ...	LHC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell

56578

ENSMUST00000135179

Cdk4-206

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
61279	129	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
56577	165	GTG ...	VYK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
68773	114	GTG ...	VRV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
86600	120	CTG ...	LKP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
431556	108	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
85902	198	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
68205	54	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
73934	48	TTG ...	LLR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
71961	159	CTG ...	LDF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
63421	99	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis

58587

ENSMUST00000140254

Cdk4-207

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
71961	159	CTG ...	LDF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
58586	30	CTG ...	LHK ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
514412	114	CTG ...	LCL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
56577	165	GTG ...	VYK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
627330	156	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
1029957	153	GTG ...	VFE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
66060	117	CTG ...	LQS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
61279	129	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
533666	63	GTG ...	VYG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
62005	87	CTG ...	LTF ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, Testis
433372	75	GTG ...	VSV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
510894	165	TTG ...	LDC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
71332	153	GTG ...	VVT ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
63421	99	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
508429	123	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
534426	78	TTG ...	LVS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
1030586	93	GTG ...	VDM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
559244	177	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
86600	120	CTG ...	LKP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
514617	60	CTG ...	LPG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
68773	114	GTG ...	VRV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
433367	78	CTG ...	LAR ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
416826	36	ATG ...	MAP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
635926	168	GTG ...	VRV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
520816	42	GTG ...	VLL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
431480	84	CTG ...	LKL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
85902	198	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
73934	48	TTG ...	LLR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
512648	96	ATG ...	MNP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
69646	45	CTG ...	LQH ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
513425	138	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
1020273	207	CTG ...	LMD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
431556	108	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
616171	138	GTG ...	VIV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
1029519	75	CTG ...	LAD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
561102	162	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
68205	54	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain

66061

ENSMUST00000123456

Cdk4-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
68773	114	GTG ...	VRV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
63421	99	GTG ...	VTS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
71961	159	CTG ...	LDF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
1020273	207	CTG ...	LMD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1029519	75	CTG ...	LAD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
66060	117	CTG ...	LQS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
506513	60	ATG ...	MEE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
86600	120	CTG ...	LKP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
520782	48	CTG ...	LEG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
71332	153	GTG ...	VVT ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Liver, Testis

1689402

ENSMUST00000133115

Cdk4-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4314	54	GTG ...	VER ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
5374	42	CTG ...	LYL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF

1228770

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
512648	96	ATG ...	MNP ...	Predicted	ATG		1	Samandi2017	sORF

822144

ENSMUST00000145670

Cdk4-209

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
524113	108	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	NSC
559244	177	CTG ...	LSP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	MEF, NSC
510894	165	TTG ...	LDC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	NSC
62005	87	CTG ...	LTF ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
58586	30	CTG ...	LHK ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC
977509	150	AAG ...	KTT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	MEF
513425	138	CTG ...	LAS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
69646	45	CTG ...	LQH ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5

ORFs

59 ORFs
7 known transcripts
128 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

56577

165

GTG...

VYK...

GTG

InCDS
NMD
Overlapping
sORF
Intronic

BMDC, E14, B_cell,
Brain, Testis, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
56578	ENSMUST00000135179	Cdk4-206	retained_intron	Ribo-seq		3	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse

524113

108

TTG...

LPP...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

Spleen_B_cell, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
822144	ENSMUST00000145670	Cdk4-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse

61279

129

GTG...

VAL...

GTG

Intronic
sORF
InCDS
NMD
Overlapping

B_cell, Brain, Testis,
BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56578	ENSMUST00000135179	Cdk4-206	retained_intron	Ribo-seq		3	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

71961

159

CTG...

LDF...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Brain, 3T3, Liver,
B_cell, Testis, E14,
MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
66061	ENSMUST00000123456	Cdk4-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse
56578	ENSMUST00000135179	Cdk4-206	retained_intron	Ribo-seq		3	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

68773

114

GTG...

VRV...

GTG

Intronic
sORF
InCDS
NMD
Overlapping

B_cell, Brain, Testis,
3T3, BMDC, E14,
MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56578	ENSMUST00000135179	Cdk4-206	retained_intron	Ribo-seq		3	sORFs_org_Mouse
66061	ENSMUST00000123456	Cdk4-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1057865

ATG...

MGP...

ATG

InCDS
Overlapping
sORF
Downstream
NMD

Brain, R1E, Glioma,
Liver, MEF, MESC,
Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse Johnstone2016

86600

120

CTG...

LKP...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Brain, Testis, Neutrophil,
3T3, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56578	ENSMUST00000135179	Cdk4-206	retained_intron	Ribo-seq		2	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
66061	ENSMUST00000123456	Cdk4-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse

1255354

147

ACG...

TTG...

ACG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

513425

138

CTG...

LAS...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic
Downstream
NMD

Brain, Spleen_B_cell, 3T3,
E14, v6-5, MEF,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
822144	ENSMUST00000145670	Cdk4-209	retained_intron	Ribo-seq		2	sORFs_org_Mouse

58586

CTG...

LHK...

CTG

Intronic
sORF

3T3, Brain, Testis,
B_cell, E14, MEF,
Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
822144	ENSMUST00000145670	Cdk4-209	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse

514412

114

CTG...

LCL...

CTG

Intronic
sORF
Alternative
Upstream

3T3, Brain, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

434542

ATG...

MQT...

ATG

InCDS
Overlapping
sORF
Downstream
NMD

Brain, R1E, Spleen_B_cell,
Glioma, Liver, MEF,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq	weak	1	Johnstone2016

514617

CTG...

LPG...

CTG

sORF
Upstream
Intronic

Brain, Liver, R1E,
Spleen_B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

627330

156

TTG...

LVL...

TTG

Intronic
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1029957

153

GTG...

VFE...

GTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1106505

GTG...

VRV...

GTG

sORF
Upstream

E14, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

66060

117

CTG...

LQS...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Brain, Liver, Testis,
MEF, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
66061	ENSMUST00000123456	Cdk4-203	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

1886429

CTG...

LAA...

CTG

sORF
Upstream

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

506513

ATG...

MEE...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic
NMD

Brain, R1E, Spleen_B_cell,
3T3, Glioma, Liver,
MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
66061	ENSMUST00000123456	Cdk4-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016

512648

ATG...

MNP...

ATG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

Brain, Spleen_B_cell,
Glioma, Liver, MEF,
MESC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
1228770	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

4314

GTG...

VER...

GTG

sORF
Downstream
NMD
InCDS
Overlapping

MEF, NSC, Skin_tumor,
v6-5, Brain, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1689402	ENSMUST00000133115	Cdk4-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

68205

GTG...

VAL...

GTG

InCDS
NMD
Overlapping
sORF
Intronic

BMDC, Neutrophil, B_cell,
Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
56578	ENSMUST00000135179	Cdk4-206	retained_intron	Ribo-seq		3	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

63421

GTG...

VTS...

GTG

Intronic
sORF
Alternative
Downstream
NMD

3T3, Liver, Brain,
Testis, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
66061	ENSMUST00000123456	Cdk4-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
56578	ENSMUST00000135179	Cdk4-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

533666

GTG...

VYG...

GTG

Intronic
sORF
Alternative
Upstream

3T3, Brain, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

1282913

AAG...

KHL...

AAG

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

62005

CTG...

LTF...

CTG

Intronic
sORF

Brain, Testis, B_cell,
E14, MEF, Neutrophil,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
822144	ENSMUST00000145670	Cdk4-209	retained_intron	Ribo-seq	moderate	8	sORFs_org_Mouse

1313879

207

CTG...

LGK...

CTG

Alternative
Downstream
NMD
sORF

E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

433372

GTG...

VSV...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping

3T3, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

510894

165

TTG...

LDC...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping
Downstream
NMD

3T3, Brain, Spleen_B_cell,
E14, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
822144	ENSMUST00000145670	Cdk4-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse

71332

153

GTG...

VVT...

GTG

Intronic
sORF
Alternative
Downstream
NMD

3T3, Brain, E14,
MEF, Neutrophil, NSC,
v6-5, Liver, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
66061	ENSMUST00000123456	Cdk4-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

1267669

156

ATT...

IAS...

ATT

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1238531

168

ACG...

TVY...

ACG

InCDS
NMD
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

431556

108

CTG...

LPL...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

Brain, R1E, Spleen_B_cell,
BMDC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
56578	ENSMUST00000135179	Cdk4-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

431480

CTG...

LKL...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

Spleen_B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

508429

123

CTG...

LLR...

CTG

Intronic
sORF
Alternative
Overlapping
Upstream

3T3, Brain, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

1475672

CTG...

LEA...

CTG

InCDS
NMD
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

85902

198

GTG...

VAE...

GTG

InCDS
NMD
Overlapping
sORF
Intronic

BMDC, E14, Neutrophil,
Brain, Testis, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
56578	ENSMUST00000135179	Cdk4-206	retained_intron	Ribo-seq		2	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse

534426

TTG...

LVS...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

3T3, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

1020273

207

CTG...

LMD...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Liver, Neutrophil, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
66061	ENSMUST00000123456	Cdk4-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1030586

GTG...

VDM...

GTG

Alternative
Downstream
NMD
sORF
Intronic

MEF, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1029519

CTG...

LAD...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Liver, Neutrophil, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
66061	ENSMUST00000123456	Cdk4-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1249134

147

ACG...

TLW...

ACG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

559244

177

CTG...

LSP...

CTG

Intronic
sORF
Alternative
Downstream
NMD

3T3, MEF, NSC,
E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
822144	ENSMUST00000145670	Cdk4-209	retained_intron	Ribo-seq		3	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

416826

ATG...

MAP...

ATG

NMD
sORF
Upstream
Intronic

Glioma, Liver, MEF,
MESC, 3T3, Brain,
C2C12, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

5374

CTG...

LYL...

CTG

Downstream
NMD
sORF
InCDS
Overlapping

MEF, Skin_tumor, v6-5,
Brain, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
1689402	ENSMUST00000133115	Cdk4-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

520816

GTG...

VLL...

GTG

InCDS
Overlapping
sORF
Intronic

Brain, R1E, Spleen_B_cell,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

73934

TTG...

LLR...

TTG

Intronic
sORF
InCDS
NMD
Overlapping

B_cell, Brain, Testis,
BMDC, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56578	ENSMUST00000135179	Cdk4-206	retained_intron	Ribo-seq		3	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1242419

132

AGG...

RYL...

AGG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

616171

138

GTG...

VIV...

GTG

Alternative
NMD
Overlapping
sORF
Upstream
Intronic

MEF, v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1109073

ATG...

MVR...

ATG

sORF
Upstream

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Predicted Ribo-seq	moderate	3	sORFs_org_Mouse Mackowiak2015

433367

CTG...

LAR...

CTG

Intronic
sORF
Upstream

3T3, Brain, Liver,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse

635926

168

GTG...

VRV...

GTG

Intronic
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

69646

CTG...

LQH...

CTG

Intronic
sORF

3T3, Brain, Testis,
B_cell, E14, MEF,
Neutrophil, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
822144	ENSMUST00000145670	Cdk4-209	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse

1248659

111

AGG...

RSL...

AGG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

520782

CTG...

LEG...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

3T3, Brain, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
66061	ENSMUST00000123456	Cdk4-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

429616

ATG...

MSV...

ATG

InCDS
Overlapping
sORF
NMD

Brain, R1E, Spleen_B_cell,
E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
4315	ENSMUST00000142558	Cdk4-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

977509

150

AAG...

KTT...

AAG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
822144	ENSMUST00000145670	Cdk4-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse

561102

162

GTG...

VSL...

GTG

Intronic
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58587	ENSMUST00000140254	Cdk4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

520762

CTG...

LHC...

CTG

Alternative
InCDS
Overlapping
sORF

R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416827	ENSMUST00000006911	Cdk4-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

Export data