Transcript 17419 | MetamORF

Transcript

ID CARD

MetamORF ID

17419

ENSMUST00000135903

Name

Cdc42se2-203

Strand

Biotype

processed_transcript

Start-end positions

54740310-54787625

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:72729

Aliases

2810404F18Rik,
AA408783, AA536669, Cdc42se2,
ENSMUSG00000052298, MGI:1919979, NCBI:72729,
OFF:Cdc42se2, SPEC2

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19263	123	TTG ...	LSE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell, Testis
17868	69	ATG ...	MLM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
419280	48	ACG ...	TQK ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	ncRNA sORF	C2C12
17418	144	CTG ...	LPS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
453853	57	GTG ...	VKQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell
310479	36	TTG ...	LRH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
20124	45	CTG ...	LCV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
418917	207	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
17582	174	CTG ...	LQL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell, Testis
91481	57	CTG ...	LKS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
771224	186	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
21114	147	CTG ...	LLP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
450495	180	GTG ...	VPH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
312330	135	CTG ...	LNQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
419044	54	AAG ...	KSL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	C2C12
21860	126	GTG ...	VLS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell, Testis
91533	63	ATG ...	MSL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
419487	81	ACG ...	TEA ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	ncRNA sORF	C2C12
20491	39	GTG ...	VSF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
21216	102	CTG ...	LEP ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell, Testis
299771	93	GTG ...	VSV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell

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