Transcript 7183 | MetamORF

Transcript

ID CARD

MetamORF ID

7183

ENSMUST00000114171

Name

Atp6ap1-202

Strand

Biotype

protein_coding

Start-end positions

74297163-74304689

CDS Start-stop positions

74297179-74303796

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:54411

Aliases

16A,
AC45, AI316502, Atp6ap1,
Atp6ip1, Atp6s1, AW108110,
C7-1, CF2, ENSMUSG00000019087,
mFLJ00383, MGI:109629, NCBI:54411,
OFF:Atp6ap1, VATPS1, XAP-3

Chr X

ORFs

59 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
7146	48	GTG ...	VCL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
1278950	138	ATC ...	IWM ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Downstream sORF	E14
631768	84	CTG ...	LVS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream sORF	E14, v6-5
885630	69	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
275692	84	ATG ...	MAL ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, NSC, v6-5
287191	108	TTG ...	LEI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
89347	45	ATG ...	MRV ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Testis, v6-5
7182	93	CTG ...	LDG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative Downstream sORF	E14, Liver, MEF, NSC, R1E, Skin_tumor, v6-5
990470	81	GTG ...	VAV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
925947	54	AAG ...	KSQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
282089	99	TTG ...	LKS ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, v6-5
275609	99	ATG ...	MLA ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	E14, Glioma, Liver, MEF, MESC, v6-5
1276542	93	AAG ...	KDP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1035411	30	ATG ...	MYC ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC
284157	63	ATG ...	MFP ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, v6-5
443481	30	ATG ...	MTT ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
287116	60	ATG ...	MSL ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC
88578	60	CTG ...	LWP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis, v6-5
285231	138	TTG ...	LRI ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF, v6-5
886854	48	CTG ...	LPC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver
283306	75	TTG ...	LPI ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, v6-5
89508	126	CTG ...	LLT ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Downstream sORF	E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
286426	114	GTG ...	VCL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, R1E
282531	120	CTG ...	LCW ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative Downstream sORF	E14, Liver, MEF, NSC, R1E, v6-5
1280217	69	ATT ...	ISM ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1754714	33	CTG ...	LWH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
88899	195	GTG ...	VTG ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	Downstream sORF	E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
285948	36	CTG ...	LQS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver
281289	60	ATG ...	MPA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
886391	75	ATG ...	MTL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
7190	42	TTG ...	LEI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
285757	117	GTG ...	VVC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF, R1E
926106	66	ATT ...	ISQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
886662	60	ATG ...	MPA ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC
1277595	63	AAG ...	KTM ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Downstream sORF	E14
89932	81	GTG ...	VTG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, MEF, Testis, v6-5
88797	84	CTG ...	LHM ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Downstream sORF	E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
276313	78	CTG ...	LLP ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, v6-5
7059	51	GTG ...	VVC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
284028	30	CTG ...	LWT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
283513	129	CTG ...	LPD ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, NSC, v6-5
284992	66	CTG ...	LKM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
1281507	132	ATT ...	ISQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
282555	54	CTG ...	LPW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
1278619	81	TTG ...	LGT ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
275976	30	ATG ...	MYC ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
280140	54	CTG ...	LVC ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
277961	33	CTG ...	LLW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
280012	72	TTG ...	LRI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
277154	87	GTG ...	VLV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	E14, v6-5
277300	114	TTG ...	LPW ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, v6-5
281058	117	CTG ...	LVN ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, NSC, v6-5
630490	48	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
7269	69	ATG ...	MPW ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1035559	54	CTG ...	LPW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
926949	33	ATT ...	ILS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
281423	30	TTG ...	LGL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
280461	114	GTG ...	VNS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, NSC, v6-5
1279923	45	GTG ...	VER ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF

Export data