Gene NCBI:54411 | MetamORF

Gene

ID CARD

NCBI:54411

Aliases

16A
AC45, AI316502, Atp6ap1
Atp6ip1, Atp6s1, AW108110
C7-1, CF2, ENSMUSG00000019087
mFLJ00383, MGI:109629, NCBI:54411
OFF:Atp6ap1, VATPS1, XAP-3

Chromosome

Transcripts

103 ORFs
10 known transcripts
210 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

279212

ENSMUST00000019231

Atp6ap1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
286426	114	GTG ...	VCL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
282089	99	TTG ...	LKS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
280461	114	GTG ...	VNS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell
443481	30	ATG ...	MTT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
285948	36	CTG ...	LQS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
990470	81	GTG ...	VAV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
632706	36	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
285231	138	TTG ...	LRI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
441468	33	TTG ...	LMT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
284157	63	ATG ...	MFP ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell
277154	87	GTG ...	VLV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
276313	78	CTG ...	LLP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell
886662	60	ATG ...	MPA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
89932	81	GTG ...	VTG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
283513	129	CTG ...	LPD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
925947	54	AAG ...	KSQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
886854	48	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1035559	54	CTG ...	LPW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
275692	84	ATG ...	MAL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
7059	51	GTG ...	VVC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1035411	30	ATG ...	MYC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
285757	117	GTG ...	VVC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
927189	39	ATC ...	IAL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
281058	117	CTG ...	LVN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
287116	60	ATG ...	MSL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
926898	54	ATT ...	IHL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
284992	66	CTG ...	LKM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
926949	33	ATT ...	ILS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
287191	108	TTG ...	LEI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
631768	84	CTG ...	LVS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
275609	99	ATG ...	MLA ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
283306	75	TTG ...	LPI ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
277300	114	TTG ...	LPW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell

7155

ENSMUST00000124797

Atp6ap1-203

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
278946	201	CTG ...	LVL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	Brain, Liver, Spleen_B_cell
277474	198	GTG ...	VLP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, Liver, Spleen_B_cell
277509	63	GTG ...	VAA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	NMD sORF	Brain, Liver, Spleen_B_cell
276301	216	TTG ...	LAP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
7154	102	GTG ...	VAY ...	Ribo-seq	GTG		7	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain, Liver, Skin_tumor, Spleen_B_cell
279835	93	CTG ...	LKL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain
630490	48	CTG ...	LPC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, Brain
1034062	33	GTG ...	VPL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Brain, Liver
281692	39	TTG ...	LTG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
7059	51	GTG ...	VVC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	3T3, Spleen_B_cell
7198	78	CTG ...	LSL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
283799	222	GTG ...	VAG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
279791	54	GTG ...	VEN ...	Ribo-seq	GTG		6	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
280140	54	CTG ...	LVC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
277035	60	CTG ...	LEL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	Brain, Liver, Spleen_B_cell
283251	129	TTG ...	LPS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
282132	72	TTG ...	LVA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
7167	126	CTG ...	LFW ...	Ribo-seq	CTG		6	sORFs_org_Mouse	NMD sORF	BMDC, Brain, Liver, Skin_tumor, Spleen_B_cell
277148	75	TTG ...	LTS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
282993	126	GTG ...	VAD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
283222	186	GTG ...	VDW ...	Ribo-seq	GTG		5	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
279439	162	CTG ...	LTT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
281289	60	ATG ...	MPA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver
278300	54	CTG ...	LGP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
282555	54	CTG ...	LPW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	Brain, Spleen_B_cell
281423	30	TTG ...	LGL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
277961	33	CTG ...	LLW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, Spleen_B_cell
281780	156	GTG ...	VSY ...	Ribo-seq	GTG		6	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
282399	222	CTG ...	LDL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
280294	84	CTG ...	LSL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
278223	123	TTG ...	LHV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	Brain, Spleen_B_cell
281639	69	GTG ...	VAV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
1034557	132	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
277930	138	CTG ...	LWA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	Brain, Liver, Spleen_B_cell
7269	69	ATG ...	MPW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	3T3, Brain
441321	51	GTG ...	VAT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	Brain, Liver, Spleen_B_cell
7146	48	GTG ...	VCL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	3T3, Brain, Spleen_B_cell
275976	30	ATG ...	MYC ...	Ribo-seq	ATG		5	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
280012	72	TTG ...	LRI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, Spleen_B_cell
279867	36	CTG ...	LLF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	Brain, Liver, Spleen_B_cell
277805	198	CTG ...	LLQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	BMDC, Brain, Liver, Spleen_B_cell
284446	243	GTG ...	VAR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
1035324	33	CTG ...	LFL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, Liver
279381	117	GTG ...	VDL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, Spleen_B_cell
7190	42	TTG ...	LEI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	3T3, Brain, Spleen_B_cell
284028	30	CTG ...	LWT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver
278511	183	GTG ...	VAS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell

630245

ENSMUST00000144075

Atp6ap1-206

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
885630	69	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
284446	243	GTG ...	VAR ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, v6-5
886391	75	ATG ...	MTL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
1278619	81	TTG ...	LGT ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	NSC
7154	102	GTG ...	VAY ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5
926409	60	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
278511	183	GTG ...	VAS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, v6-5
283799	222	GTG ...	VAG ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, v6-5
281692	39	TTG ...	LTG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
277148	75	TTG ...	LTS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
279791	54	GTG ...	VEN ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
7167	126	CTG ...	LFW ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5
281780	156	GTG ...	VSY ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
277805	198	CTG ...	LLQ ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, Liver, MEF, Neutrophil, NSC, v6-5

7183

ENSMUST00000114171

Atp6ap1-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
7146	48	GTG ...	VCL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
1278950	138	ATC ...	IWM ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Downstream sORF	E14
631768	84	CTG ...	LVS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream sORF	E14, v6-5
885630	69	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
275692	84	ATG ...	MAL ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, NSC, v6-5
287191	108	TTG ...	LEI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
89347	45	ATG ...	MRV ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Testis, v6-5
7182	93	CTG ...	LDG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative Downstream sORF	E14, Liver, MEF, NSC, R1E, Skin_tumor, v6-5
990470	81	GTG ...	VAV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
925947	54	AAG ...	KSQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
282089	99	TTG ...	LKS ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, v6-5
275609	99	ATG ...	MLA ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	E14, Glioma, Liver, MEF, MESC, v6-5
1276542	93	AAG ...	KDP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1035411	30	ATG ...	MYC ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC
284157	63	ATG ...	MFP ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, v6-5
443481	30	ATG ...	MTT ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
287116	60	ATG ...	MSL ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC
88578	60	CTG ...	LWP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis, v6-5
285231	138	TTG ...	LRI ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF, v6-5
886854	48	CTG ...	LPC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver
283306	75	TTG ...	LPI ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, v6-5
89508	126	CTG ...	LLT ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Downstream sORF	E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
286426	114	GTG ...	VCL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, R1E
282531	120	CTG ...	LCW ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative Downstream sORF	E14, Liver, MEF, NSC, R1E, v6-5
1280217	69	ATT ...	ISM ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1754714	33	CTG ...	LWH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
88899	195	GTG ...	VTG ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	Downstream sORF	E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
285948	36	CTG ...	LQS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver
281289	60	ATG ...	MPA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
886391	75	ATG ...	MTL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
7190	42	TTG ...	LEI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
285757	117	GTG ...	VVC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF, R1E
926106	66	ATT ...	ISQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
886662	60	ATG ...	MPA ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC
1277595	63	AAG ...	KTM ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Downstream sORF	E14
89932	81	GTG ...	VTG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, MEF, Testis, v6-5
88797	84	CTG ...	LHM ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Downstream sORF	E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
276313	78	CTG ...	LLP ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, v6-5
7059	51	GTG ...	VVC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
284028	30	CTG ...	LWT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
283513	129	CTG ...	LPD ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, NSC, v6-5
284992	66	CTG ...	LKM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
1281507	132	ATT ...	ISQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
282555	54	CTG ...	LPW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
1278619	81	TTG ...	LGT ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
275976	30	ATG ...	MYC ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
280140	54	CTG ...	LVC ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
277961	33	CTG ...	LLW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
280012	72	TTG ...	LRI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
277154	87	GTG ...	VLV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	E14, v6-5
277300	114	TTG ...	LPW ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, v6-5
281058	117	CTG ...	LVN ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, NSC, v6-5
630490	48	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
7269	69	ATG ...	MPW ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1035559	54	CTG ...	LPW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
926949	33	ATT ...	ILS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
281423	30	TTG ...	LGL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
280461	114	GTG ...	VNS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, NSC, v6-5
1279923	45	GTG ...	VER ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF

275693

ENSMUST00000144506

Atp6ap1-207

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
284157	63	ATG ...	MFP ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
89508	126	CTG ...	LLT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
277276	45	CTG ...	LTY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
283306	75	TTG ...	LPI ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
283513	129	CTG ...	LPD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
281511	237	CTG ...	LAS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
277300	114	TTG ...	LPW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
276313	78	CTG ...	LLP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
88899	195	GTG ...	VTG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
766515	87	GTG ...	VSK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
281692	39	TTG ...	LTG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
275692	84	ATG ...	MAL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
88797	84	CTG ...	LHM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
282089	99	TTG ...	LKS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
282897	216	GTG ...	VSA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain

275610

ENSMUST00000154630

Atp6ap1-210

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
88899	195	GTG ...	VTG ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF	3T3, BMDC, Brain
281058	117	CTG ...	LVN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF	3T3, BMDC, Brain
275609	99	ATG ...	MLA ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	sORF	3T3, BMDC, Brain
89508	126	CTG ...	LLT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	3T3, BMDC, Brain
282531	120	CTG ...	LCW ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	3T3, Brain
631768	84	CTG ...	LVS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF	3T3, Brain
277154	87	GTG ...	VLV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF	3T3, Brain
280461	114	GTG ...	VNS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF	3T3, BMDC, Brain
88797	84	CTG ...	LHM ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	3T3, BMDC, Brain
7182	93	CTG ...	LDG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	3T3, BMDC, Brain

628425

ENSMUST00000136056

Atp6ap1-205

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
278223	123	TTG ...	LHV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	BMDC, Brain
276301	216	TTG ...	LAP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	BMDC, Brain
282993	126	GTG ...	VAD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	BMDC, Brain
278946	201	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	BMDC, Brain
277035	60	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	BMDC, Brain
279381	117	GTG ...	VDL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	BMDC, Brain
278300	54	CTG ...	LGP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	BMDC
277509	63	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3
275976	30	ATG ...	MYC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	BMDC, Brain
279867	36	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	BMDC
281289	60	ATG ...	MPA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	BMDC, Brain
279439	162	CTG ...	LTT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	BMDC, Brain
277474	198	GTG ...	VLP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	BMDC, Brain
630490	48	CTG ...	LPC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	BMDC, Brain
277930	138	CTG ...	LWA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain
282399	222	CTG ...	LDL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	BMDC, Brain
282555	54	CTG ...	LPW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain
283222	186	GTG ...	VDW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	BMDC, Brain

7060

ENSMUST00000135914

Atp6ap1-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
7190	42	TTG ...	LEI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor
7269	69	ATG ...	MPW ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor
7146	48	GTG ...	VCL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
1034483	132	GTG ...	VVS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
89347	45	ATG ...	MRV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
7198	78	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
280012	72	TTG ...	LRI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
7059	51	GTG ...	VVC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
990470	81	GTG ...	VAV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
88578	60	CTG ...	LWP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver

766288

ENSMUST00000147900

Atp6ap1-209

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
926106	66	ATT ...	ISQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	BMDC
282555	54	CTG ...	LPW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	B_cell
275976	30	ATG ...	MYC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	B_cell

886823

ENSMUST00000147275

Atp6ap1-208

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
89932	81	GTG ...	VTG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Liver

3256414

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
275609	99	ATG ...	MLA ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

103 ORFs
10 known transcripts
210 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

286426

114

GTG...

VCL...

GTG

InCDS
Overlapping
sORF

Brain, BMDC, E14,
MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse

278946

201

CTG...

LVL...

CTG

NMD
sORF

Brain, Liver, Spleen_B_cell,
BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

885630

CTG...

LPQ...

CTG

ncRNA
sORF
InCDS
Overlapping

Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

282089

TTG...

LKS...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

Spleen_B_cell, 3T3, BMDC,
E14, MEF, NSC,
v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	8	sORFs_org_Mouse
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

277474

198

GTG...

VLP...

GTG

NMD
sORF

Brain, Liver, Spleen_B_cell,
BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

280461

114

GTG...

VNS...

GTG

Alternative
InCDS
Overlapping
sORF
Downstream

BMDC, Brain, Spleen_B_cell,
3T3, E14, MEF,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
275610	ENSMUST00000154630	Atp6ap1-210	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

7146

GTG...

VCL...

GTG

InCDS
Overlapping
sORF
Intronic
NMD

MEF, v6-5, Skin_tumor,
3T3, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
7060	ENSMUST00000135914	Atp6ap1-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

443481

ATG...

MTT...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream

Spleen_B_cell, Glioma, Liver,
MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	1	Johnstone2016

1278950

138

ATC...

IWM...

ATC

Downstream
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

284157

ATG...

MFP...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

B_cell, Brain, Liver,
BMDC, Spleen_B_cell, 3T3,
E14, MEF, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse

88899

195

GTG...

VTG...

GTG

sORF
Downstream
Intronic

3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Testis, v6-5, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275610	ENSMUST00000154630	Atp6ap1-210	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	11	sORFs_org_Mouse
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

277509

GTG...

VAA...

GTG

NMD
sORF

Brain, Liver, Spleen_B_cell,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

631768

CTG...

LVS...

CTG

Alternative
Downstream
sORF
InCDS
Overlapping

E14, v6-5, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
275610	ENSMUST00000154630	Atp6ap1-210	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

278223

123

TTG...

LHV...

TTG

NMD
sORF

BMDC, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

276301

216

TTG...

LAP...

TTG

NMD
sORF

3T3, Brain, Liver,
Spleen_B_cell, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

284446

243

GTG...

VAR...

GTG

ncRNA
sORF
NMD

B_cell, E14, Liver,
MEF, Neutrophil, NSC,
v6-5, 3T3, BMDC,
Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq		8	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

7154

102

GTG...

VAY...

GTG

NMD
sORF
ncRNA

3T3, BMDC, Brain,
Liver, Skin_tumor, Spleen_B_cell,
B_cell, E14, MEF,
Neutrophil, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

285948

CTG...

LQS...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, Spleen_B_cell, 3T3,
E14, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

279835

CTG...

LKL...

CTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

630490

CTG...

LPC...

CTG

NMD
sORF
Alternative
InCDS
Overlapping

3T3, Brain, BMDC,
E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

990470

GTG...

VAV...

GTG

Alternative
InCDS
Overlapping
sORF
Intronic

Brain, MEF, NSC,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
7060	ENSMUST00000135914	Atp6ap1-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1034062

GTG...

VPL...

GTG

NMD
sORF

Brain, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

275692

ATG...

MAL...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, BMDC, E14,
Glioma, Liver, MEF,
MESC, NSC, v6-5,
Spleen_B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	strong	8	sORFs_org_Mouse Johnstone2016
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

886391

ATG...

MTL...

ATG

ncRNA
sORF
InCDS
Overlapping

Liver, Glioma, MEF,
MESC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse Johnstone2016

1278619

TTG...

LGT...

TTG

ncRNA
sORF
Alternative
InCDS
Overlapping

NSC, E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq	strong	1	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

287191

108

TTG...

LEI...

TTG

InCDS
Overlapping
sORF

BMDC, MEF, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

632706

GTG...

VAS...

GTG

Alternative
sORF
Upstream

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

282993

126

GTG...

VAD...

GTG

NMD
sORF

BMDC, Brain, 3T3,
Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

281692

TTG...

LTG...

TTG

NMD
sORF
ncRNA
Intronic

3T3, BMDC, Brain,
Liver, Spleen_B_cell, E14,
MEF, Neutrophil, NSC,
v6-5, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq		6	sORFs_org_Mouse
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse

89508

126

CTG...

LLT...

CTG

Intronic
sORF
Downstream

Liver, 3T3, BMDC,
Brain, E14, MEF,
Neutrophil, NSC, R1E,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
275610	ENSMUST00000154630	Atp6ap1-210	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse

89347

ATG...

MRV...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

Glioma, Liver, MEF,
MESC, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse Johnstone2016
7060	ENSMUST00000135914	Atp6ap1-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

7190

TTG...

LEI...

TTG

Intronic
sORF
InCDS
Overlapping
NMD

MEF, Skin_tumor, 3T3,
Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7060	ENSMUST00000135914	Atp6ap1-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

7182

CTG...

LDG...

CTG

Alternative
Downstream
sORF

E14, Liver, MEF,
NSC, R1E, Skin_tumor,
v6-5, 3T3, BMDC,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
275610	ENSMUST00000154630	Atp6ap1-210	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

7059

GTG...

VVC...

GTG

NMD
sORF
InCDS
Overlapping
Intronic

3T3, Spleen_B_cell, Brain,
MEF, v6-5, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
7060	ENSMUST00000135914	Atp6ap1-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

281058

117

CTG...

LVN...

CTG

sORF
Alternative
InCDS
Overlapping
Downstream

3T3, BMDC, Brain,
Spleen_B_cell, E14, MEF,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275610	ENSMUST00000154630	Atp6ap1-210	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

925947

AAG...

KSQ...

AAG

Alternative
InCDS
Overlapping
sORF

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

277276

CTG...

LTY...

CTG

Intronic
sORF

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse

7198

CTG...

LSL...

CTG

NMD
sORF
Intronic

3T3, Brain, Liver,
Spleen_B_cell, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
7060	ENSMUST00000135914	Atp6ap1-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

285231

138

TTG...

LRI...

TTG

InCDS
Overlapping
sORF

Brain, BMDC, MEF,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse

283799

222

GTG...

VAG...

GTG

NMD
sORF
ncRNA

3T3, BMDC, Brain,
Liver, Spleen_B_cell, B_cell,
E14, MEF, Neutrophil,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq		8	sORFs_org_Mouse

277035

CTG...

LEL...

CTG

NMD
sORF

BMDC, Brain, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

441468

TTG...

LMT...

TTG

Alternative
InCDS
Overlapping
sORF

Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

275609

ATG...

MLA...

ATG

Alternative
Downstream
sORF
InCDS
Overlapping

E14, Glioma, Liver,
MEF, MESC, v6-5,
3T3, BMDC, Brain,
Spleen_B_cell,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse Johnstone2016
275610	ENSMUST00000154630	Atp6ap1-210	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
3256414	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

283306

TTG...

LPI...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

Brain, Liver, 3T3,
BMDC, E14, MEF,
NSC, v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1276542

AAG...

KDP...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

277154

GTG...

VLV...

GTG

Alternative
InCDS
Overlapping
sORF
Downstream

Brain, 3T3, E14,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
275610	ENSMUST00000154630	Atp6ap1-210	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

279381

117

GTG...

VDL...

GTG

NMD
sORF

BMDC, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

279791

GTG...

VEN...

GTG

NMD
sORF
ncRNA

3T3, BMDC, Brain,
Liver, Spleen_B_cell, B_cell,
E14, MEF, Neutrophil,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq		7	sORFs_org_Mouse

1035411

ATG...

MYC...

ATG

Alternative
InCDS
Overlapping
sORF

BMDC, Glioma, Liver,
MEF, MESC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse Johnstone2016
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

280140

CTG...

LVC...

CTG

NMD
sORF
Alternative
InCDS
Overlapping

3T3, Brain, Liver,
Spleen_B_cell, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

276313

CTG...

LLP...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

BMDC, Brain, Spleen_B_cell,
3T3, E14, MEF,
NSC, v6-5, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	8	sORFs_org_Mouse
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

7269

ATG...

MPW...

ATG

Intronic
sORF
NMD
Alternative
InCDS
Overlapping

MEF, Skin_tumor, 3T3,
Brain, Glioma, Liver,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7060	ENSMUST00000135914	Atp6ap1-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse Johnstone2016

283251

129

TTG...

LPS...

TTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

278300

CTG...

LGP...

CTG

NMD
sORF

BMDC, 3T3, Brain,
Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

886662

ATG...

MPA...

ATG

Alternative
InCDS
Overlapping
sORF

Brain, BMDC, E14,
Glioma, Liver, MEF,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse Johnstone2016

282132

TTG...

LVA...

TTG

NMD
sORF

3T3, Brain, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

926409

ATG...

MSL...

ATG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

89932

GTG...

VTG...

GTG

Alternative
InCDS
Overlapping
sORF

Brain, BMDC, Liver,
MEF, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
886823	ENSMUST00000147275	Atp6ap1-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse

7167

126

CTG...

LFW...

CTG

NMD
sORF
ncRNA

BMDC, Brain, Liver,
Skin_tumor, Spleen_B_cell, 3T3,
B_cell, E14, MEF,
Neutrophil, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

283513

129

CTG...

LPD...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

Brain, Spleen_B_cell, 3T3,
BMDC, E14, Liver,
MEF, NSC, v6-5,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	9	sORFs_org_Mouse
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

277148

TTG...

LTS...

TTG

NMD
sORF
ncRNA

3T3, BMDC, Brain,
Liver, Spleen_B_cell, B_cell,
E14, MEF, Neutrophil,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq		6	sORFs_org_Mouse

886854

CTG...

LPC...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, BMDC, E14,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

287116

ATG...

MSL...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, E14,
Glioma, Liver, MEF,
MESC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse Johnstone2016
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

283222

186

GTG...

VDW...

GTG

NMD
sORF

3T3, Brain, Liver,
Spleen_B_cell, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

88578

CTG...

LWP...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

MEF, Testis, v6-5,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
7060	ENSMUST00000135914	Atp6ap1-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

278511

183

GTG...

VAS...

GTG

ncRNA
sORF
NMD

B_cell, E14, Liver,
MEF, Neutrophil, NSC,
v6-5, 3T3, BMDC,
Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq		8	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

282531

120

CTG...

LCW...

CTG

sORF
Alternative
Downstream

3T3, Brain, E14,
Liver, MEF, NSC,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275610	ENSMUST00000154630	Atp6ap1-210	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse

279439

162

CTG...

LTT...

CTG

NMD
sORF

3T3, Brain, Liver,
Spleen_B_cell, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1035559

CTG...

LPW...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

281289

ATG...

MPA...

ATG

NMD
sORF
Alternative
InCDS
Overlapping

3T3, Brain, Liver,
E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

282555

CTG...

LPW...

CTG

NMD
sORF
Alternative
InCDS
Overlapping

Brain, Spleen_B_cell, E14,
MEF, NSC, B_cell,
3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
766288	ENSMUST00000147900	Atp6ap1-209	protein_coding	Ribo-seq		1	sORFs_org_Mouse
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

281423

TTG...

LGL...

TTG

NMD
sORF
Alternative
InCDS
Overlapping

3T3, Brain, Liver,
Spleen_B_cell, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

277961

CTG...

LLW...

CTG

NMD
sORF
Alternative
InCDS
Overlapping

Brain, Spleen_B_cell, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

285757

117

GTG...

VVC...

GTG

InCDS
Overlapping
sORF

Brain, BMDC, MEF,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

281780

156

GTG...

VSY...

GTG

NMD
sORF
ncRNA

3T3, BMDC, Brain,
Liver, Spleen_B_cell, B_cell,
E14, MEF, Neutrophil,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq		7	sORFs_org_Mouse

275976

ATG...

MYC...

ATG

NMD
sORF
Alternative
InCDS
Overlapping

BMDC, Brain, E14,
MEF, NSC, 3T3,
Liver, Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
766288	ENSMUST00000147900	Atp6ap1-209	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1280217

ATT...

ISM...

ATT

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

282399

222

CTG...

LDL...

CTG

NMD
sORF

3T3, Brain, Liver,
Spleen_B_cell, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

280294

CTG...

LSL...

CTG

NMD
sORF

3T3, Brain, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

1754714

CTG...

LWH...

CTG

InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

926106

ATT...

ISQ...

ATT

sORF
InCDS
Overlapping

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
766288	ENSMUST00000147900	Atp6ap1-209	protein_coding	Ribo-seq		1	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

279867

CTG...

LLF...

CTG

NMD
sORF

BMDC, Brain, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

281639

GTG...

VAV...

GTG

NMD
sORF

3T3, Brain, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

927189

ATC...

IAL...

ATC

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1034557

132

CTG...

LST...

CTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

277930

138

CTG...

LWA...

CTG

NMD
sORF

Brain, Liver, Spleen_B_cell,
3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
628425	ENSMUST00000136056	Atp6ap1-205	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1277595

AAG...

KTM...

AAG

Downstream
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

88797

CTG...

LHM...

CTG

Downstream
sORF
Intronic

E14, Liver, MEF,
Neutrophil, NSC, R1E,
Testis, v6-5, B_cell,
3T3, BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	11	sORFs_org_Mouse
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
275610	ENSMUST00000154630	Atp6ap1-210	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

926898

ATT...

IHL...

ATT

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

284992

CTG...

LKM...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, 3T3, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1034483

132

GTG...

VVS...

GTG

Intronic
sORF

BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7060	ENSMUST00000135914	Atp6ap1-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

284028

CTG...

LWT...

CTG

Alternative
InCDS
Overlapping
sORF
NMD

MEF, 3T3, Brain,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1281507

132

ATT...

ISQ...

ATT

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

441321

GTG...

VAT...

GTG

NMD
sORF

Brain, Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

926949

ATT...

ILS...

ATT

Alternative
InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

280012

TTG...

LRI...

TTG

InCDS
Overlapping
sORF
NMD
Intronic

MEF, v6-5, 3T3,
Brain, Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
7060	ENSMUST00000135914	Atp6ap1-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

281511

237

CTG...

LAS...

CTG

Intronic
sORF

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

277300

114

TTG...

LPW...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

Brain, 3T3, BMDC,
E14, MEF, NSC,
v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	9	sORFs_org_Mouse
279212	ENSMUST00000019231	Atp6ap1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

277805

198

CTG...

LLQ...

CTG

NMD
sORF
ncRNA

BMDC, Brain, Liver,
Spleen_B_cell, 3T3, B_cell,
E14, MEF, Neutrophil,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
630245	ENSMUST00000144075	Atp6ap1-206	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

1035324

CTG...

LFL...

CTG

NMD
sORF

Brain, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7155	ENSMUST00000124797	Atp6ap1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

766515

GTG...

VSK...

GTG

Intronic
sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

282897

216

GTG...

VSA...

GTG

Intronic
sORF

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275693	ENSMUST00000144506	Atp6ap1-207	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

1279923

GTG...

VER...

GTG

Alternative
InCDS
Overlapping
sORF

E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7183	ENSMUST00000114171	Atp6ap1-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

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