Transcript 1043586

Transcript

ID CARD

MetamORF ID

1043586

ENSMUST00000200201

Name

Adsl-211

Strand

Biotype

nonsense_mediated_decay

Start-end positions

80948519-80963969

CDS Start-stop positions

80948548-80960487

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:11564

Aliases

Adl,
Adsl, Asl, ENSMUSG00000022407,
MGI:103202, NCBI:11564, OFF:Adsl

Chr 15

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
32092	60	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Neutrophil
1142333	54	CTG ...	LLC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
685654	30	ATG ...	MHL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
472289	129	CTG ...	LKV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
471193	75	GTG ...	VIS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
471446	132	GTG ...	VLK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
1044527	87	CTG ...	LFT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil, NSC, v6-5
471654	63	ATG ...	MLP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	CDS NMD sORF	MEF, v6-5
1144462	33	TTG ...	LLR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, v6-5
789147	57	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1616499	54	TTG ...	LDS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	CDS NMD sORF	MEF
1043788	111	CTG ...	LRF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Neutrophil, v6-5
789573	78	TTG ...	LAT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
471281	138	CTG ...	LAV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
1142991	108	TTG ...	LCS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	CDS NMD sORF	E14, MEF, v6-5
1617679	99	TTG ...	LVS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
31143	48	CTG ...	LKE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Neutrophil
32335	57	CTG ...	LAN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Neutrophil
1143571	57	TTG ...	LGN ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
1142091	42	TTG ...	LPT ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
421383	153	CTG ...	LHP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1044762	195	CTG ...	LTT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14, MEF, Neutrophil, v6-5
1676140	39	CTG ...	LHG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	CDS NMD sORF	MEF
1044018	132	TTG ...	LKR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14, Neutrophil
469439	60	CTG ...	LPL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	CDS NMD sORF	MEF
1711780	45	GTG ...	VSC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
471865	33	CTG ...	LPT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, NSC, v6-5

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