Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:11564

Aliases

Adl
Adsl, Asl, ENSMUSG00000022407
MGI:103202, NCBI:11564, OFF:Adsl

Chromosome

15

Transcripts

72 ORFs
11 known transcripts
162 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

1145020 ENSMUST00000023043 Adsl-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1856889 168

CTG ...

LKV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1856882 81

TTG ...

LAT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1145555 78

TTG ...

LNV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1619874 30

CTG ...

LKD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1855401 78

TTG ...

LAL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
R1E
1857040 171

GTG ...

VLK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1185082 192

CTG ...

LHP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1144846 90

CTG ...

LCS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1145019 120

ATG ...

MPT ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, R1E,
v6-5
688777 177

CTG ...

LAV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1856955 60

CTG ...

LRA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

32092 60

CTG ...

LLA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Neutrophil
1142333 54

CTG ...

LLC ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF, v6-5
685654 30

ATG ...

MHL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
v6-5
472289 129

CTG ...

LKV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
v6-5
471193 75

GTG ...

VIS ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
471446 132

GTG ...

VLK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
v6-5
1044527 87

CTG ...

LFT ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
MEF, Neutrophil, NSC,
v6-5
471654 63

ATG ...

MLP ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    CDS
    NMD
    sORF
MEF, v6-5
1144462 33

TTG ...

LLR ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
789147 57

CTG ...

LRA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
1616499 54

TTG ...

LDS ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    CDS
    NMD
    sORF
MEF
1043788 111

CTG ...

LRF ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14, Neutrophil, v6-5
789573 78

TTG ...

LAT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
471281 138

CTG ...

LAV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
v6-5
1142991 108

TTG ...

LCS ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    CDS
    NMD
    sORF
E14, MEF, v6-5
1617679 99

TTG ...

LVS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
MEF
31143 48

CTG ...

LKE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Neutrophil
32335 57

CTG ...

LAN ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Neutrophil
1143571 57

TTG ...

LGN ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF, v6-5
1142091 42

TTG ...

LPT ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF, v6-5
421383 153

CTG ...

LHP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
1044762 195

CTG ...

LTT ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
E14, MEF, Neutrophil,
v6-5
1676140 39

CTG ...

LHG ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    CDS
    NMD
    sORF
MEF
1044018 132

TTG ...

LKR ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
E14, Neutrophil
469439 60

CTG ...

LPL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    CDS
    NMD
    sORF
MEF
1711780 45

GTG ...

VSC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
MEF
471865 33

CTG ...

LPT ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1405832 ENSMUST00000199284 Adsl-210 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1352294 123

CTG ...

LMA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    NMD
    sORF
Liver
686170 180

GTG ...

VLS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    NMD
    sORF
Liver
1619119 84

GTG ...

VQW ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    NMD
    sORF
MEF
1353217 135

CTG ...

LAR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    NMD
    sORF
Liver
1405877 78

CTG ...

LPF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    NMD
    sORF
Liver
470871 39

TTG ...

LNV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    NMD
    sORF
MEF
470899 51

CTG ...

LCS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    NMD
    sORF
MEF
682960 156

GTG ...

VVK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    NMD
    sORF
Liver
470737 ENSMUST00000164806 Adsl-204 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

688777 177

CTG ...

LAV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1619453 33

CTG ...

LKR ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1185082 192

CTG ...

LHP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1145257 39

ATG ...

MHL ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1181127 48

ATT ...

IPG ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
421383 153

CTG ...

LHP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1184593 42

AGG ...

RGI ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
470736 30

CTG ...

LKD ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, Spleen_B_cell,
v6-5
471281 138

CTG ...

LAV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
685654 30

ATG ...

MHL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
1144846 90

CTG ...

LCS ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
470899 51

CTG ...

LCS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Spleen_B_cell
1145555 78

TTG ...

LNV ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
471446 132

GTG ...

VLK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
789573 78

TTG ...

LAT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
687799 66

TTG ...

LNG ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
789147 57

CTG ...

LRA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1619874 30

CTG ...

LKD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
470871 39

TTG ...

LNV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1142515 ENSMUST00000169238 Adsl-207 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1619119 84

GTG ...

VQW ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
MEF
682864 129

GTG ...

VGR ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
NSC
470871 39

TTG ...

LNV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
MEF, v6-5
1493414 141

TTG ...

LSS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
NSC
1044018 132

TTG ...

LKR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
v6-5
470899 51

CTG ...

LCS ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14, MEF, NSC,
v6-5
1353217 135

CTG ...

LAR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
1352294 123

CTG ...

LMA ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14, MEF
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

685515 63

CTG ...

LAG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
3T3
1855748 33

GTG ...

VSG ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
R1E
1044018 132

TTG ...

LKR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
R1E
472289 129

CTG ...

LKV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
3T3
1854983 33

CTG ...

LRK ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
R1E
1142991 108

TTG ...

LCS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    CDS
    NMD
    sORF
R1E
1044304 240

CTG ...

LNN ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
R1E
683109 84

ATG ...

MPT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
3T3, R1E
471281 138

CTG ...

LAV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
3T3
1856604 51

TTG ...

LTS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
R1E
684960 75

CTG ...

LEE ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
3T3, R1E
686170 180

GTG ...

VLS ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Downstream
    NMD
    sORF
3T3, R1E
32335 57

CTG ...

LAN ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
1043788 111

CTG ...

LRF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
687728 63

GTG ...

VRP ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
3T3, R1E
470871 39

TTG ...

LNV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
3T3, R1E
1044762 195

CTG ...

LTT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
R1E
470736 30

CTG ...

LKD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
3T3
471193 75

GTG ...

VIS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
R1E
469439 60

CTG ...

LPL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    CDS
    NMD
    sORF
R1E
1044798 288

CTG ...

LGL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
R1E
32092 60

CTG ...

LLA ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
687107 54

CTG ...

LLK ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
3T3, R1E
1405877 78

CTG ...

LPF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
R1E
1144462 33

TTG ...

LLR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
R1E
470899 51

CTG ...

LCS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
3T3, R1E
1616499 54

TTG ...

LDS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    CDS
    NMD
    sORF
R1E
471865 33

CTG ...

LPT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
R1E
1856376 75

CTG ...

LEH ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
R1E
1142091 42

TTG ...

LPT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
R1E
1142333 54

CTG ...

LLC ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
R1E
682960 156

GTG ...

VVK ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Downstream
    NMD
    sORF
3T3, R1E
1352294 123

CTG ...

LMA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
682864 129

GTG ...

VGR ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
3T3
471654 63

ATG ...

MLP ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    CDS
    NMD
    sORF
R1E
471446 132

GTG ...

VLK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
3T3
1617679 99

TTG ...

LVS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
1353217 135

CTG ...

LAR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
789147 57

CTG ...

LRA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
R1E
682877 75

TTG ...

LLQ ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
3T3
1855552 66

GTG ...

VRC ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
687799 66

TTG ...

LNG ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
3T3, R1E
1044527 87

CTG ...

LFT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
1044440 282

TTG ...

LPI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
R1E
789573 78

TTG ...

LAT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
R1E
789801 ENSMUST00000198302 Adsl-209 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

421383 153

CTG ...

LHP ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
789800 72

CTG ...

LLL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, R1E
472289 129

CTG ...

LKV ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1854937 63

GTG ...

VSA ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
790629 69

CTG ...

LLV ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
471281 138

CTG ...

LAV ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
471446 132

GTG ...

VLK ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
469440 ENSMUST00000207170 Adsl-212 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

421383 153

CTG ...

LHP ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
3T3, BMDC, Spleen_B_cell
471865 33

CTG ...

LPT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
3T3, Spleen_B_cell
471654 63

ATG ...

MLP ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    sORF
Spleen_B_cell
469439 60

CTG ...

LPL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
Spleen_B_cell
471193 75

GTG ...

VIS ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    sORF
3T3, Spleen_B_cell
471446 132

GTG ...

VLK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
Spleen_B_cell
471281 138

CTG ...

LAV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
Spleen_B_cell
472289 129

CTG ...

LKV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
Spleen_B_cell
685654 30

ATG ...

MHL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
3T3
421384 ENSMUST00000168756 Adsl-206 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1143571 57

TTG ...

LGN ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1676140 39

CTG ...

LHG ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
469439 60

CTG ...

LPL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1144846 90

CTG ...

LCS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
471446 132

GTG ...

VLK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
789147 57

CTG ...

LRA ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
1145555 78

TTG ...

LNV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
421383 153

CTG ...

LHP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, C2C12
471281 138

CTG ...

LAV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
789573 78

TTG ...

LAT ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
471654 63

ATG ...

MLP ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
470899 51

CTG ...

LCS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
472289 129

CTG ...

LKV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
1616499 54

TTG ...

LDS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
31144 ENSMUST00000163575 Adsl-202 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

31143 48

CTG ...

LKE ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
32092 60

CTG ...

LLA ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
32335 57

CTG ...

LAN ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
1043973 ENSMUST00000164371 Adsl-203 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

789147 57

CTG ...

LRA ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
v6-5
1044440 282

TTG ...

LPI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
471446 132

GTG ...

VLK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1044304 240

CTG ...

LNN ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
421383 153

CTG ...

LHP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
1766205 69

CTG ...

LGF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
472289 129

CTG ...

LKV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1142333 54

CTG ...

LLC ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF
1044798 288

CTG ...

LGL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, Neutrophil
789573 78

TTG ...

LAT ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil
471281 138

CTG ...

LAV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
3013519 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1145019 120

ATG ...

MPT ...

Predicted
ATG

1 Samandi2017
    sORF

ORFs

72 ORFs
11 known transcripts
162 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1856889 168

CTG...

LKV...

CTG Alternative
InCDS
Overlapping
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1145020 ENSMUST00000023043 Adsl-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
32092 60

CTG...

LLA...

CTG Alternative
Downstream
NMD
sORF
Intronic
Neutrophil, Testis, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
31144 ENSMUST00000163575 Adsl-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
1352294 123

CTG...

LMA...

CTG NMD
sORF
Alternative
Downstream
Liver, R1E, E14,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1405832 ENSMUST00000199284 Adsl-210 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1142515 ENSMUST00000169238 Adsl-207 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
688777 177

CTG...

LAV...

CTG Alternative
InCDS
Overlapping
sORF
3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
1145020 ENSMUST00000023043 Adsl-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1142333 54

CTG...

LLC...

CTG Alternative
InCDS
NMD
Overlapping
sORF
Intronic
MEF, v6-5, E14,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1043973 ENSMUST00000164371 Adsl-203 retained_intron Ribo-seq
3 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
685654 30

ATG...

MHL...

ATG Alternative
InCDS
NMD
Overlapping
sORF
v6-5, Brain, E14,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
469440 ENSMUST00000207170 Adsl-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
1619119 84

GTG...

VQW...

GTG Alternative
Downstream
NMD
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1142515 ENSMUST00000169238 Adsl-207 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1405832 ENSMUST00000199284 Adsl-210 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
685515 63

CTG...

LAG...

CTG Alternative
Downstream
NMD
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
472289 129

CTG...

LKV...

CTG Alternative
InCDS
NMD
Overlapping
sORF
Intronic
v6-5, 3T3, R1E,
E14, B_cell, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
789801 ENSMUST00000198302 Adsl-209 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1043973 ENSMUST00000164371 Adsl-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
1 sORFs_org_Mouse
469440 ENSMUST00000207170 Adsl-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
1619453 33

CTG...

LKR...

CTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
421383 153

CTG...

LHP...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
NMD
R1E, 3T3, BMDC,
Spleen_B_cell, E14, v6-5,
B_cell, C2C12, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

789801 ENSMUST00000198302 Adsl-209 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
469440 ENSMUST00000207170 Adsl-212 protein_coding Ribo-seq
3 sORFs_org_Mouse
470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
1043973 ENSMUST00000164371 Adsl-203 retained_intron Ribo-seq
2 sORFs_org_Mouse
421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
2 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1855748 33

GTG...

VSG...

GTG Alternative
Downstream
NMD
Overlapping
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
471193 75

GTG...

VIS...

GTG InCDS
NMD
Overlapping
sORF
E14, MEF, Neutrophil,
NSC, v6-5, 3T3,
Spleen_B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
469440 ENSMUST00000207170 Adsl-212 protein_coding Ribo-seq
2 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1044018 132

TTG...

LKR...

TTG Alternative
Downstream
NMD
Overlapping
sORF
R1E, v6-5, E14,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1142515 ENSMUST00000169238 Adsl-207 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
471446 132

GTG...

VLK...

GTG Alternative
InCDS
NMD
Overlapping
sORF
Intronic
v6-5, E14, B_cell,
Spleen_B_cell, 3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1043973 ENSMUST00000164371 Adsl-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
1 sORFs_org_Mouse
469440 ENSMUST00000207170 Adsl-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
789801 ENSMUST00000198302 Adsl-209 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1143571 57

TTG...

LGN...

TTG Alternative
InCDS
Overlapping
sORF
NMD
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
moderate 3 sORFs_org_Mouse
1185082 192

CTG...

LHP...

CTG Alternative
InCDS
Overlapping
sORF
E14, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
1145020 ENSMUST00000023043 Adsl-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1145257 39

ATG...

MHL...

ATG Alternative
InCDS
Overlapping
sORF
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
31143 48

CTG...

LKE...

CTG Intronic
sORF
Alternative
Downstream
NMD
Testis, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

31144 ENSMUST00000163575 Adsl-202 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1181127 48

ATT...

IPG...

ATT Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1854983 33

CTG...

LRK...

CTG Alternative
InCDS
NMD
Overlapping
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
682864 129

GTG...

VGR...

GTG Downstream
NMD
sORF
NSC, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1142515 ENSMUST00000169238 Adsl-207 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
789147 57

CTG...

LRA...

CTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
E14, MEF, Neutrophil,
v6-5, B_cell, R1E,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043973 ENSMUST00000164371 Adsl-203 retained_intron Ribo-seq
4 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
2 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
471865 33

CTG...

LPT...

CTG sORF
InCDS
NMD
Overlapping
3T3, Spleen_B_cell, R1E,
E14, MEF, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

469440 ENSMUST00000207170 Adsl-212 protein_coding Ribo-seq
2 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
4 sORFs_org_Mouse
1044440 282

TTG...

LPI...

TTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
Neutrophil, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043973 ENSMUST00000164371 Adsl-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1142991 108

TTG...

LCS...

TTG CDS
NMD
sORF
R1E, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
686170 180

GTG...

VLS...

GTG NMD
sORF
Downstream
Liver, 3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1405832 ENSMUST00000199284 Adsl-210 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1856882 81

TTG...

LAT...

TTG Alternative
InCDS
Overlapping
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1145020 ENSMUST00000023043 Adsl-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
789800 72

CTG...

LLL...

CTG Intronic
sORF
B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

789801 ENSMUST00000198302 Adsl-209 retained_intron Ribo-seq
2 sORFs_org_Mouse
1044304 240

CTG...

LNN...

CTG Alternative
InCDS
NMD
Overlapping
sORF
Intronic
R1E, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1043973 ENSMUST00000164371 Adsl-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
683109 84

ATG...

MPT...

ATG Alternative
Downstream
NMD
sORF
3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1145555 78

TTG...

LNV...

TTG Alternative
InCDS
Overlapping
sORF
R1E, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1145020 ENSMUST00000023043 Adsl-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
1 sORFs_org_Mouse
471281 138

CTG...

LAV...

CTG Alternative
InCDS
NMD
Overlapping
sORF
Intronic
3T3, E14, v6-5,
B_cell, Spleen_B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
1 sORFs_org_Mouse
469440 ENSMUST00000207170 Adsl-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
789801 ENSMUST00000198302 Adsl-209 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
1043973 ENSMUST00000164371 Adsl-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
1856604 51

TTG...

LTS...

TTG Alternative
InCDS
NMD
Overlapping
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
1619874 30

CTG...

LKD...

CTG Alternative
InCDS
Overlapping
sORF
R1E, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1145020 ENSMUST00000023043 Adsl-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
1855401 78

TTG...

LAL...

TTG Alternative
Overlapping
sORF
Upstream
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1145020 ENSMUST00000023043 Adsl-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1184593 42

AGG...

RGI...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
684960 75

CTG...

LEE...

CTG Alternative
Downstream
NMD
sORF
3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
moderate 2 sORFs_org_Mouse
470871 39

TTG...

LNV...

TTG Alternative
Downstream
NMD
sORF
InCDS
Overlapping
MEF, v6-5, 3T3,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1142515 ENSMUST00000169238 Adsl-207 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1405832 ENSMUST00000199284 Adsl-210 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
1044527 87

CTG...

LFT...

CTG Alternative
Downstream
NMD
sORF
MEF, Neutrophil, NSC,
v6-5, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
6 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1676140 39

CTG...

LHG...

CTG InCDS
Overlapping
sORF
CDS
NMD
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
32335 57

CTG...

LAN...

CTG Alternative
Downstream
NMD
sORF
Intronic
R1E, Neutrophil, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
31144 ENSMUST00000163575 Adsl-202 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1043788 111

CTG...

LRF...

CTG Alternative
Downstream
NMD
sORF
R1E, E14, Neutrophil,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
687728 63

GTG...

VRP...

GTG Alternative
Downstream
NMD
sORF
3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
moderate 2 sORFs_org_Mouse
469439 60

CTG...

LPL...

CTG InCDS
Overlapping
sORF
CDS
NMD
MEF, Spleen_B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
469440 ENSMUST00000207170 Adsl-212 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
471654 63

ATG...

MLP...

ATG sORF
CDS
NMD
InCDS
Overlapping
Spleen_B_cell, MEF, v6-5,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

469440 ENSMUST00000207170 Adsl-212 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
moderate 2 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
470736 30

CTG...

LKD...

CTG Alternative
InCDS
Overlapping
sORF
Downstream
NMD
MEF, NSC, Spleen_B_cell,
v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1044762 195

CTG...

LTT...

CTG Alternative
Downstream
NMD
Overlapping
sORF
R1E, E14, MEF,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
1144846 90

CTG...

LCS...

CTG Alternative
InCDS
Overlapping
sORF
MEF, E14, v6-5,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
1 sORFs_org_Mouse
470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
1145020 ENSMUST00000023043 Adsl-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1353217 135

CTG...

LAR...

CTG NMD
sORF
Alternative
Downstream
Liver, R1E, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1405832 ENSMUST00000199284 Adsl-210 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1142515 ENSMUST00000169238 Adsl-207 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1144462 33

TTG...

LLR...

TTG Alternative
InCDS
NMD
Overlapping
sORF
E14, MEF, NSC,
v6-5, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
6 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1493414 141

TTG...

LSS...

TTG Downstream
NMD
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1142515 ENSMUST00000169238 Adsl-207 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1857040 171

GTG...

VLK...

GTG Alternative
InCDS
Overlapping
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1145020 ENSMUST00000023043 Adsl-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1854937 63

GTG...

VSA...

GTG Intronic
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

789801 ENSMUST00000198302 Adsl-209 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1766205 69

CTG...

LGF...

CTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043973 ENSMUST00000164371 Adsl-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
1616499 54

TTG...

LDS...

TTG CDS
NMD
sORF
InCDS
Overlapping
MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
moderate 2 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1044798 288

CTG...

LGL...

CTG Alternative
InCDS
NMD
Overlapping
sORF
Intronic
R1E, E14, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1043973 ENSMUST00000164371 Adsl-203 retained_intron Ribo-seq
2 sORFs_org_Mouse
1405877 78

CTG...

LPF...

CTG NMD
sORF
Downstream
Liver, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1405832 ENSMUST00000199284 Adsl-210 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
789573 78

TTG...

LAT...

TTG Alternative
InCDS
NMD
Overlapping
sORF
Intronic
MEF, Brain, E14,
Neutrophil, B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
1043973 ENSMUST00000164371 Adsl-203 retained_intron Ribo-seq
3 sORFs_org_Mouse
421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
2 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
470899 51

CTG...

LCS...

CTG Alternative
InCDS
Overlapping
sORF
Downstream
NMD
E14, Spleen_B_cell, 3T3,
R1E, MEF, NSC,
v6-5, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1142515 ENSMUST00000169238 Adsl-207 nonsense_mediated_decay Ribo-seq
4 sORFs_org_Mouse
421384 ENSMUST00000168756 Adsl-206 protein_coding Ribo-seq
1 sORFs_org_Mouse
1405832 ENSMUST00000199284 Adsl-210 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
687107 54

CTG...

LLK...

CTG Alternative
Downstream
NMD
sORF
3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
weak 2 sORFs_org_Mouse
1617679 99

TTG...

LVS...

TTG Alternative
Downstream
NMD
sORF
MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1145019 120

ATG...

MPT...

ATG sORF
Alternative
InCDS
Overlapping
Brain, E14,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3013519 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
1145020 ENSMUST00000023043 Adsl-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1856376 75

CTG...

LEH...

CTG Downstream
NMD
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1142091 42

TTG...

LPT...

TTG Alternative
InCDS
NMD
Overlapping
sORF
R1E, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
790629 69

CTG...

LLV...

CTG Intronic
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

789801 ENSMUST00000198302 Adsl-209 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
682960 156

GTG...

VVK...

GTG Downstream
NMD
sORF
3T3, R1E, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1405832 ENSMUST00000199284 Adsl-210 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
687799 66

TTG...

LNG...

TTG Alternative
InCDS
Overlapping
sORF
Downstream
NMD
NSC, 3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

470737 ENSMUST00000164806 Adsl-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
weak 2 sORFs_org_Mouse
682877 75

TTG...

LLQ...

TTG Downstream
NMD
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
1855552 66

GTG...

VRC...

GTG Alternative
Downstream
NMD
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

682298 ENSMUST00000166711 Adsl-205 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
1711780 45

GTG...

VSC...

GTG Alternative
Downstream
NMD
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1043586 ENSMUST00000200201 Adsl-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1856955 60

CTG...

LRA...

CTG Alternative
InCDS
Overlapping
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1145020 ENSMUST00000023043 Adsl-201 protein_coding Ribo-seq
1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5