Transcript 414570

Transcript

ID CARD

MetamORF ID

414570

ENSMUST00000167386

Name

Actb-206

Strand

Biotype

processed_transcript

Start-end positions

142904395-142906725

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:11461

Aliases

Actb,
Actx, beta-actin, E430023M04Rik,
ENSMUSG00000029580, MGI:87904, NCBI:11461,
OFF:Actb

Chr 5

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
521142	33	TTG ...	LRP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
2515	114	CTG ...	LRW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
180584	75	GTG ...	VLC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
2087	39	ATG ...	MWV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	C2C12
1987	123	ATG ...	MTI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
64025	33	GTG ...	VTR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
1742	54	ATG ...	MLP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
175478	42	TTG ...	LQL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, C2C12, R1E
833909	174	TTG ...	LQL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver
2387	57	ATG ...	MLP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, v6-5
414618	117	ATA ...	ISL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	C2C12
2487	45	CTG ...	LYS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, v6-5
2526	126	ATG ...	MTI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver

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