Transcript 92956 | MetamORF

Transcript

ID CARD

MetamORF ID

92956

ENSMUST00000154658

Name

Gnas-220

Strand

Biotype

processed_transcript

Start-end positions

174297859-174346502

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:14683

Aliases

5530400H20Rik,
A930027G11Rik, C130027O20Rik, ENSMUSG00000027523,
Galphas, Gnas, Gnas1,
Gnasxl, GPSA, Gs-alpha,
Gsa, GSP, MGI:95777,
NCBI:14683, Nesp, Nesp55,
Nespl, Oed-Sml, Oedsml,
OFF:Gnas, P1, P2,
P3, PHP1A, PHP1B,
POH, SCG6

Chr 2

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
105779	54	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
95638	36	TTG ...	LGR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
120999	186	GTG ...	VTR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, MEF, Spleen_B_cell
964386	228	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
969283	51	AGG ...	RMR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
968639	42	ATC ...	IKN ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
968472	231	AAG ...	KTC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
49892	300	CTG ...	LLA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Liver, MEF, R1E
49190	171	ATG ...	MGA ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
49569	108	ATG ...	MLM ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Liver, R1E
44244	111	GTG ...	VSS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
116591	198	GTG ...	VLN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
107292	30	CTG ...	LHV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
105040	186	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
969617	72	ATC ...	ISA ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
117254	225	GTG ...	VFS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
493473	30	CTG ...	LPC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
964611	42	ATC ...	IIQ ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
49105	30	CTG ...	LES ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Brain
44850	69	ATG ...	MPR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
46930	36	GTG ...	VPA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
47302	183	CTG ...	LLV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
966000	72	ATC ...	IRR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
968594	60	ACG ...	TSC ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
49641	150	CTG ...	LRI ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, R1E
964042	174	CTG ...	LDK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
51191	102	ATG ...	MGL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
104342	30	CTG ...	LKE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
98403	72	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
964281	63	AAG ...	KAT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
45100	126	CTG ...	LRT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
968455	30	ACG ...	TCR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
966465	45	ATC ...	IFE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
499043	33	CTG ...	LRT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
108688	234	GTG ...	VFL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
967674	102	ACG ...	TTA ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
46656	177	GTG ...	VEM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
969152	126	ATC ...	IFV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
48548	93	GTG ...	VTS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
15014	87	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
970084	36	AGG ...	RTT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
114397	87	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
49187	33	GTG ...	VLE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain

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