Transcript 8494 | MetamORF

Transcript

ID CARD

MetamORF ID

8494

ENSMUST00000188593

Name

Tuba4a-206

Strand

Biotype

protein_coding

Start-end positions

75215612-75217434

CDS Start-stop positions

75216589-

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:22145

Aliases

ENSMUSG00000026202,
M[a]4, MGI:1095410, NCBI:22145,
OFF:Tuba4a, Tuba4, Tuba4a

Chr 1

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9669	66	CTG ...	LEK ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	sORF	E14, MEF, R1E, Skin_tumor, v6-5
10381	57	CTG ...	LEL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	Skin_tumor
9817	246	CTG ...	LAK ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	sORF	B_cell, Brain, E14, Neutrophil, R1E, Skin_tumor, v6-5
1611447	96	TTG ...	LYT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	MEF
378839	84	ATG ...	MWV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
10413	123	GTG ...	VGE ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	sORF	B_cell, MEF, R1E, Skin_tumor, v6-5
13989	225	GTG ...	VCM ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	sORF	B_cell, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, v6-5
299942	111	ATG ...	MPR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
9249	42	ATG ...	MCL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	R1E, Skin_tumor
314554	78	GTG ...	VRE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	MEF
13206	216	CTG ...	LSN ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	sORF	B_cell, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, v6-5
15449	42	TTG ...	LLK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	Skin_tumor
13490	33	CTG ...	LIS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	Neutrophil, Skin_tumor
14315	237	GTG ...	VQR ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	sORF	B_cell, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, v6-5
374014	30	CTG ...	LPW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	MEF
14401	51	CTG ...	LEN ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	Skin_tumor
12841	261	GTG ...	VPG ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	sORF	B_cell, Brain, E14, Neutrophil, R1E, Skin_tumor, v6-5
8493	264	GTG ...	VVP ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	sORF	B_cell, Brain, E14, Neutrophil, R1E, Skin_tumor
13855	177	CTG ...	LDH ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	sORF	B_cell, Brain, MEF, Neutrophil, R1E, Skin_tumor, v6-5
10678	159	TTG ...	LMY ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	sORF	B_cell, MEF, Neutrophil, R1E, Skin_tumor, v6-5
9460	63	GTG ...	VKL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	Skin_tumor
856678	39	TTG ...	LEG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF	E14
464162	51	CTG ...	LRL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	MEF

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