Transcript 7988 | MetamORF

Transcript

ID CARD

MetamORF ID

7988

ENSMUST00000139959

Name

Rack1-205

Strand

Biotype

processed_transcript

Start-end positions

48800357-48806088

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:14694

Aliases

AL033335,
ENSMUSG00000020372, GB-like, Gnb2-rs1,
Gnb2l1, MGI:101849, NCBI:14694,
OFF:Rack1, p205, Rack1

Chr 11

ORFs

51 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
22654	96	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
302078	54	ATG ...	MAR ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
298709	72	CTG ...	LMV ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
295986	39	TTG ...	LSL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
295929	63	CTG ...	LPR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, Spleen_B_cell
446230	30	TTG ...	LSL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Neutrophil, NSC, Spleen_B_cell
419751	267	ATC ...	IAT ...	Ribo-seq	ATC		2	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12
8329	39	CTG ...	LGV ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
774319	99	GTG ...	VLQ ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC
21729	48	GTG ...	VPS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
8760	45	CTG ...	LTT ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
291449	60	CTG ...	LSY ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, Spleen_B_cell
9097	87	GTG ...	VGT ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
19331	90	GTG ...	VVA ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell
8584	111	GTG ...	VAF ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
8114	72	ATG ...	MPC ...	Ribo-seq	ATG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
311312	36	ATG ...	MRP ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
9336	234	CTG ...	LSA ...	Ribo-seq	CTG		18	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
91902	72	GTG ...	VLG ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, Spleen_B_cell
647137	39	CTG ...	LAI ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, NSC, v6-5
307137	84	TTG ...	LLS ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, v6-5
305114	60	TTG ...	LPS ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, v6-5
8208	33	CTG ...	LPL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
313117	54	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
9080	120	GTG ...	VLS ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
23152	66	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
7987	84	ATG ...	MGN ...	Ribo-seq	ATG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
23837	108	GTG ...	VGT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
419049	153	CTG ...	LRG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Neutrophil, v6-5
9065	90	ATG ...	MVG ...	Ribo-seq	ATG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
91342	75	GTG ...	VVL ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell
975488	237	ATC ...	ILS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	MEF
303098	90	GTG ...	VML ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
23375	84	ATG ...	MDP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, R1E
419477	93	TTG ...	LCP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, NSC, v6-5
9309	93	ATG ...	MPC ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, R1E, v6-5
419247	33	CTG ...	LRR ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, Spleen_B_cell
21467	87	GTG ...	VAA ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell
772909	72	CTG ...	LRC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
305777	195	CTG ...	LTR ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
995792	246	CTG ...	LWD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, NSC
769114	78	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
90877	99	ATG ...	MRV ...	Ribo-seq	ATG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
449758	63	CTG ...	LFA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell
645059	42	TTG ...	LLA ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, NSC
8856	117	TTG ...	LSV ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
303663	102	ATG ...	MGV ...	Ribo-seq	ATG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
293060	69	ATG ...	MVS ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
307389	87	ATG ...	MLL ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, v6-5
22696	72	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, v6-5
19726	72	GTG ...	VSA ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5

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