Transcript 78938 | MetamORF

Transcript

ID CARD

MetamORF ID

78938

ENSMUST00000212291

Name

Mt1-203

Strand

Biotype

protein_coding

Start-end positions

94179211-94180327

CDS Start-stop positions

94179311-94180193

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

NCBI:17748

Aliases

ENSMUSG00000031765,
MGI:97171, Mt-1, MT-I,
Mt1, NCBI:17748, OFF:Mt1

Chr 8

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
81587	45	CTG ...	LQR ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
238962	45	CTG ...	LRL ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E
5354	96	CTG ...	LLL ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis
79576	90	GTG ...	VPR ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5
919490	84	AGG ...	RAV ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
5703	93	CTG ...	LLL ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E
78937	78	GTG ...	VSA ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Brain, Liver, MEF, NSC, R1E, Testis, v6-5
5423	63	ATG ...	MCP ...	Ribo-seq	ATG	weak	13	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis
5587	87	CTG ...	LLS ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Testis
237962	30	CTG ...	LQV ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E
1108382	69	CTG ...	LPP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream sORF	NSC, v6-5
246805	63	CTG ...	LHL ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E
241444	63	CTG ...	LSS ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, Liver, MEF, Neutrophil, NSC
5254	84	CTG ...	LSR ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis
242542	30	CTG ...	LST ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, Liver, MEF, Neutrophil, NSC
249571	42	GTG ...	VPD ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF, NSC, R1E, v6-5
5545	51	CTG ...	LCL ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
243529	57	TTG ...	LHQ ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, R1E
1106870	33	GTG ...	VTN ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Downstream sORF	MEF, NSC, R1E, v6-5
237956	39	CTG ...	LQE ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E
5488	72	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis

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