Transcript 769177

Transcript

ID CARD

MetamORF ID

769177

ENSMUST00000142788

Name

Elp5-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

69968222-69980272

CDS Start-stop positions

69970739-69980259

CDS Relative positions

Sequences

Transcript sequence

TGA ...

Genome browsers

UCSC

Gene

NCBI:54351

Aliases

Derp6,
Elp5, ENSMUSG00000018565, MGI:1859017,
NCBI:54351, OFF:Elp5, Rai12

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19165	30	CTG ...	LEK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, MEF
295178	60	GTG ...	VEW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Neutrophil
91754	87	TTG ...	LTF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
307099	66	CTG ...	LGC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF
769176	30	CTG ...	LVK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
21935	39	TTG ...	LMM ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
296256	90	ATG ...	MAQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
313390	75	ATG ...	MKG ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
19688	45	ATG ...	MLL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF
20276	33	ATG ...	MWT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
21988	102	CTG ...	LHP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
20024	54	ATG ...	MSQ ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	B_cell, Glioma, Liver, MEF, MESC
299769	39	ATG ...	MKS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
304134	36	CTG ...	LKA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
17845	66	ATG ...	MTS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain
299376	75	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
312456	54	GTG ...	VSE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF
21539	36	ATG ...	MMW ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
17887	36	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
306096	69	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
309953	33	GTG ...	VLH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, MEF
639654	69	CTG ...	LAT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
21030	105	CTG ...	LLH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
18283	39	GTG ...	VDP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	B_cell

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