Transcript 49621 | MetamORF

Transcript

ID CARD

MetamORF ID

49621

ENSMUST00000141470

Name

Ssna1-204

Strand

Biotype

processed_transcript

Start-end positions

25271086-25272438

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

NCBI:68475

Aliases

1110003H09Rik,
1190004J23Rik, AA934184, ENSMUSG00000026966,
MGI:1915725, N14, NA14,
NCBI:68475, OFF:Ssna1, Ssna1

Chr 2

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
106498	105	CTG ...	LES ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC
498855	54	CTG ...	LTK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, E14
50958	297	TTG ...	LCQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Testis
45109	51	GTG ...	VPA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
49620	180	CTG ...	LAR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Testis
499220	87	CTG ...	LLS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
1217335	219	AGG ...	RQL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1211850	156	AGG ...	RQL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1217668	243	AAG ...	KQR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
116153	234	TTG ...	LCQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
48735	72	GTG ...	VSE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
50857	201	TTG ...	LAR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, Liver, Testis
109162	159	GTG ...	VRQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
100764	285	CTG ...	LQN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
111807	189	ATG ...	MPH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
1210310	84	AAG ...	KPQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
109786	195	GTG ...	VDM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
97618	264	TTG ...	LVK ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
1211846	180	AAG ...	KQR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
51202	222	GTG ...	VRQ ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, Liver, Testis
494397	96	GTG ...	VQA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
113132	213	CTG ...	LCR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF
739682	30	GTG ...	VYS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
51572	276	CTG ...	LCR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Testis

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