Transcript 493006

Transcript

ID CARD

MetamORF ID

493006

ENSMUST00000079464

Name

Tuba4a-201

Strand

Biotype

protein_coding

Start-end positions

75214972-75218624

CDS Start-stop positions

75215622-

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:22145

Aliases

ENSMUSG00000026202,
M[a]4, MGI:1095410, NCBI:22145,
OFF:Tuba4a, Tuba4, Tuba4a

Chr 1

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
374234	78	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF	Liver
367917	39	CTG ...	LKP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
470150	96	GTG ...	VHR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	Liver
451312	96	ATG ...	MHQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	3T3
502864	102	TTG ...	LSV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Liver
364563	51	TTG ...	LAR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
395325	54	CTG ...	LWC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Liver
493005	222	GTC ...	VAS ...	Ribo-seq	GTC		5	sORFs_org_Mouse	sORF	B_cell, Liver, Neutrophil, Spleen_B_cell
440183	138	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Liver
314554	78	GTG ...	VRE ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	E14, MEF
460590	156	CTG ...	LPA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	Liver
336406	63	GTG ...	VPH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	Liver
474532	66	GTG ...	VVI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	Liver
147610	159	CTG ...	LLP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	Liver
299942	111	ATG ...	MPR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
467213	72	ATG ...	MPV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Liver
471572	69	TTG ...	LTM ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	sORF	3T3, Liver
455023	66	CTG ...	LVP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	Liver
332649	99	CTG ...	LGK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Liver
311180	33	GTG ...	VHA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	3T3
450699	54	GTG ...	VPS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	Liver
534948	36	CTG ...	LCL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	Liver
378839	84	ATG ...	MWV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
322011	87	ATG ...	MQP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Liver
15449	42	TTG ...	LLK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	3T3
466393	72	GTG ...	VTL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	3T3
456109	72	CTG ...	LLT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	3T3, Liver
458607	63	ATG ...	MAK ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	sORF	3T3, Liver
13490	33	CTG ...	LIS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	MEF
1611447	96	TTG ...	LYT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	MEF
348618	108	TTG ...	LWT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Liver
464162	51	CTG ...	LRL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	3T3, MEF
502100	195	ATG ...	MVF ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	3T3, E14, Liver, Neutrophil
346462	141	ATG ...	MAH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver
294567	153	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver
374014	30	CTG ...	LPW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	3T3, MEF

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