Transcript 464460

Transcript

ID CARD

MetamORF ID

464460

ENSMUST00000159153

Name

Gas5-204

Strand

Biotype

retained_intron

Start-end positions

161035186-161038478

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:14455

Aliases

ENSMUSG00000053332,
Gas-5, Gas5, MGI:95659,
Mir5117, NCBI:14455, OFF:Gas5,
Snhg2

Chr 1

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
288026	30	ATG ...	MKA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
373705	30	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
779477	69	GTG ...	VMG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
759950	81	GTG ...	VWT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, R1E
1837735	54	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
31661	66	ATG ...	MGH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, R1E
464459	72	GTG ...	VDL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
832563	87	ATG ...	MAV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
11612	66	CTG ...	LFT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell

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