Gene NCBI:14455 | MetamORF

Gene

ID CARD

NCBI:14455

Aliases

ENSMUSG00000053332
Gas-5, Gas5, MGI:95659
Mir5117, NCBI:14455, OFF:Gas5
Snhg2

Chromosome

Transcripts

28 ORFs
12 known transcripts
86 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

236712

ENSMUST00000159404

Gas5-207

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1603773	78	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1590013	156	ATG ...	MWT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
1578132	120	ATG ...	MVG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
832563	87	ATG ...	MAV ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC
288026	30	ATG ...	MKA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, v6-5
1621119	117	GTG ...	VGF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
395239	45	CTG ...	LWQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, v6-5
31661	66	ATG ...	MGH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
977324	33	AGG ...	RMK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	MEF
1601443	120	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1496558	51	ATG ...	MFF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
1618266	183	CTG ...	LDM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1627576	66	TTG ...	LKS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
9912	39	GTG ...	VAK ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, NSC, v6-5
350107	36	CTG ...	LCG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
464459	72	GTG ...	VDL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	MEF, NSC, v6-5
1611002	162	GTG ...	VPM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
373705	30	TTG ...	LRL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, NSC, v6-5
1638892	186	CTG ...	LLD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
779477	69	GTG ...	VMG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1632728	177	ATG ...	MCN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
1601476	123	CTG ...	LMV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1621834	75	TTG ...	LTA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
759950	81	GTG ...	VWT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC

779478

ENSMUST00000161229

Gas5-218

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
832563	87	ATG ...	MAV ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
464459	72	GTG ...	VDL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
9912	39	GTG ...	VAK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
779477	69	GTG ...	VMG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
395239	45	CTG ...	LWQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
288026	30	ATG ...	MKA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell

277852

ENSMUST00000162289

Gas5-223

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1627576	66	TTG ...	LKS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
759950	81	GTG ...	VWT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
9912	39	GTG ...	VAK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
1700226	87	GTG ...	VKK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
277851	45	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1590013	156	ATG ...	MWT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
1632728	177	ATG ...	MCN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
288026	30	ATG ...	MKA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
464459	72	GTG ...	VDL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1603773	78	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
832563	87	ATG ...	MAV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
350107	36	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1611002	162	GTG ...	VPM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
395239	45	CTG ...	LWQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
1496558	51	ATG ...	MFF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
373705	30	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1621834	75	TTG ...	LTA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1601443	120	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF

688319

ENSMUST00000161380

Gas5-219

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9912	39	GTG ...	VAK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
350107	36	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
373705	30	TTG ...	LRL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
759950	81	GTG ...	VWT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
832563	87	ATG ...	MAV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
977324	33	AGG ...	RMK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
31661	66	ATG ...	MGH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14

464460

ENSMUST00000159153

Gas5-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
288026	30	ATG ...	MKA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
373705	30	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
779477	69	GTG ...	VMG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
759950	81	GTG ...	VWT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, R1E
1837735	54	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
31661	66	ATG ...	MGH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, R1E
464459	72	GTG ...	VDL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
832563	87	ATG ...	MAV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
11612	66	CTG ...	LFT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell

412827

ENSMUST00000159438

Gas5-208

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
350107	36	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1601443	120	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
759950	81	GTG ...	VWT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
31661	66	ATG ...	MGH ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	C2C12
11612	66	CTG ...	LFT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
832563	87	ATG ...	MAV ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
464459	72	GTG ...	VDL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
9912	39	GTG ...	VAK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
395239	45	CTG ...	LWQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
288026	30	ATG ...	MKA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF

793319

ENSMUST00000160152

Gas5-212

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
31661	66	ATG ...	MGH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
779477	69	GTG ...	VMG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
759950	81	GTG ...	VWT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
350107	36	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
832563	87	ATG ...	MAV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
464459	72	GTG ...	VDL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain

1677778

ENSMUST00000160516

Gas5-215

retained_intron

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

277851

GTG ...

VTS ...

Ribo-seq

GTG

weak

sORFs_org_Mouse

MEF

9913

ENSMUST00000160429

Gas5-213

retained_intron

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

ORF annotations

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

9912

GTG ...

VAK ...

Ribo-seq

GTG

sORFs_org_Mouse

Skin_tumor

11612

CTG ...

LFT ...

Ribo-seq

CTG

sORFs_org_Mouse

Skin_tumor

2991875

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1632728	177	ATG ...	MCN ...	Predicted	ATG		1	Samandi2017	sORF
1578132	120	ATG ...	MVG ...	Predicted	ATG		1	Samandi2017	sORF

1619085

ENSMUST00000162163

Gas5-222

retained_intron

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

ORF annotations

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

277851

GTG ...

VTS ...

Ribo-seq

GTG

sORFs_org_Mouse

MEF

1707707

ENSMUST00000161623

Gas5-221

retained_intron

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

ORF annotations

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

277851

GTG ...

VTS ...

Ribo-seq

GTG

sORFs_org_Mouse

MEF

31662

ENSMUST00000159157

Gas5-205

retained_intron

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

ORF annotations

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

31661

ATG ...

MGH ...

Ribo-seq

ATG

sORFs_org_Mouse

Testis

ORFs

28 ORFs
12 known transcripts
86 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1603773

CTG...

LLT...

CTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse

832563

ATG...

MAV...

ATG

Intronic
sORF

B_cell, MEF, Neutrophil,
NSC, Liver, E14,
BMDC, R1E, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
779478	ENSMUST00000161229	Gas5-218	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		2	sORFs_org_Mouse
412827	ENSMUST00000159438	Gas5-208	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
688319	ENSMUST00000161380	Gas5-219	retained_intron	Ribo-seq		1	sORFs_org_Mouse
464460	ENSMUST00000159153	Gas5-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
793319	ENSMUST00000160152	Gas5-212	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1627576

TTG...

LKS...

TTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

9912

GTG...

VAK...

GTG

Intronic
sORF

3T3, MEF, Spleen_B_cell,
Skin_tumor, B_cell, Brain,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
688319	ENSMUST00000161380	Gas5-219	retained_intron	Ribo-seq		1	sORFs_org_Mouse
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		2	sORFs_org_Mouse
9913	ENSMUST00000160429	Gas5-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse
779478	ENSMUST00000161229	Gas5-218	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		5	sORFs_org_Mouse
412827	ENSMUST00000159438	Gas5-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

759950

GTG...

VWT...

GTG

Intronic
sORF

MEF, E14, B_cell,
R1E, Brain, Neutrophil,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse
412827	ENSMUST00000159438	Gas5-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
688319	ENSMUST00000161380	Gas5-219	retained_intron	Ribo-seq		1	sORFs_org_Mouse
464460	ENSMUST00000159153	Gas5-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
793319	ENSMUST00000160152	Gas5-212	retained_intron	Ribo-seq		1	sORFs_org_Mouse
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse

1590013

156

ATG...

MWT...

ATG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1578132

120

ATG...

MVG...

ATG

Intronic
sORF

MEF,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
2991875	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

288026

ATG...

MKA...

ATG

Intronic
sORF

Brain, MEF, v6-5,
BMDC, Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		3	sORFs_org_Mouse
464460	ENSMUST00000159153	Gas5-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		2	sORFs_org_Mouse
779478	ENSMUST00000161229	Gas5-218	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
412827	ENSMUST00000159438	Gas5-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1700226

GTG...

VKK...

GTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse

350107

CTG...

LCG...

CTG

Intronic
sORF

MEF, 3T3, Spleen_B_cell,
Brain, v6-5, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
412827	ENSMUST00000159438	Gas5-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
688319	ENSMUST00000161380	Gas5-219	retained_intron	Ribo-seq		1	sORFs_org_Mouse
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
793319	ENSMUST00000160152	Gas5-212	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1601443

120

GTG...

VEV...

GTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
412827	ENSMUST00000159438	Gas5-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse

277851

GTG...

VTS...

GTG

Intronic
sORF

Brain, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1677778	ENSMUST00000160516	Gas5-215	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
1619085	ENSMUST00000162163	Gas5-222	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1707707	ENSMUST00000161623	Gas5-221	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1621119

117

GTG...

VGF...

GTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1632728

177

ATG...

MCN...

ATG

Intronic
sORF

MEF,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse
2991875	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

31661

ATG...

MGH...

ATG

Intronic
sORF

Brain, C2C12, MEF,
B_cell, BMDC, R1E,
E14, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
793319	ENSMUST00000160152	Gas5-212	retained_intron	Ribo-seq		1	sORFs_org_Mouse
412827	ENSMUST00000159438	Gas5-208	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
464460	ENSMUST00000159153	Gas5-204	retained_intron	Ribo-seq		3	sORFs_org_Mouse
688319	ENSMUST00000161380	Gas5-219	retained_intron	Ribo-seq		1	sORFs_org_Mouse
31662	ENSMUST00000159157	Gas5-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

395239

CTG...

LWQ...

CTG

Intronic
sORF

Brain, MEF, v6-5,
B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		3	sORFs_org_Mouse
779478	ENSMUST00000161229	Gas5-218	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		2	sORFs_org_Mouse
412827	ENSMUST00000159438	Gas5-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

464459

GTG...

VDL...

GTG

Intronic
sORF

B_cell, MEF, NSC,
v6-5, BMDC, Spleen_B_cell,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
779478	ENSMUST00000161229	Gas5-218	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse
412827	ENSMUST00000159438	Gas5-208	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		3	sORFs_org_Mouse
464460	ENSMUST00000159153	Gas5-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
793319	ENSMUST00000160152	Gas5-212	retained_intron	Ribo-seq		1	sORFs_org_Mouse

779477

GTG...

VMG...

GTG

Intronic
sORF

Brain, R1E, B_cell,
Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
793319	ENSMUST00000160152	Gas5-212	retained_intron	Ribo-seq		1	sORFs_org_Mouse
464460	ENSMUST00000159153	Gas5-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
779478	ENSMUST00000161229	Gas5-218	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

373705

TTG...

LRL...

TTG

Intronic
sORF

3T3, R1E, Brain,
MEF, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
688319	ENSMUST00000161380	Gas5-219	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
464460	ENSMUST00000159153	Gas5-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse

11612

CTG...

LFT...

CTG

Intronic
sORF

MEF, Skin_tumor, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
412827	ENSMUST00000159438	Gas5-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
9913	ENSMUST00000160429	Gas5-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse
464460	ENSMUST00000159153	Gas5-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

977324

AGG...

RMK...

AGG

Intronic
sORF

MEF, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
688319	ENSMUST00000161380	Gas5-219	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1837735

GTG...

VGS...

GTG

Intronic
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
464460	ENSMUST00000159153	Gas5-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1496558

ATG...

MFF...

ATG

Intronic
sORF

MEF, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1618266

183

CTG...

LDM...

CTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1611002

162

GTG...

VPM...

GTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1638892

186

CTG...

LLD...

CTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1621834

TTG...

LTA...

TTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
277852	ENSMUST00000162289	Gas5-223	retained_intron	Ribo-seq		1	sORFs_org_Mouse
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1601476

123

CTG...

LMV...

CTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236712	ENSMUST00000159404	Gas5-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

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