Transcript 39502 | MetamORF

Transcript

ID CARD

MetamORF ID

39502

ENSMUST00000212115

Name

Iws1-203

Strand

Biotype

retained_intron

Start-end positions

32067794-32098451

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:73473

Aliases

1700069O15Rik,
3000008H23, AL117927, AW214353,
ENSMUSG00000024384, Iws1, MGI:1920723,
NCBI:73473, OFF:Iws1

Chr 18

ORFs

75 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
397942	237	CTG ...	LLV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell, v6-5
395677	75	GTG ...	VMY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain
393824	249	ATG ...	MQS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
397180	111	GTG ...	VMS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, Spleen_B_cell
716462	204	ATG ...	MPP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
485694	45	GTG ...	VML ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
39501	66	GTG ...	VKI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Testis, v6-5
394036	72	CTG ...	LTV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
396208	219	ATG ...	MNL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
40210	75	TTG ...	LNN ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	Brain, E14, Spleen_B_cell, Testis
394841	36	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
715950	171	ATG ...	MTV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
485457	63	ATG ...	MLM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
40548	33	TTG ...	LPT ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	Brain, E14, NSC, Testis, v6-5
397487	156	GTG ...	VTL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
396892	66	CTG ...	LYK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain
485591	66	GTG ...	VML ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
486394	33	CTG ...	LEK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
398659	297	GTG ...	VRS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
396921	117	GTG ...	VSQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
714436	84	CTG ...	LEI ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
398423	189	CTG ...	LKM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
485770	60	CTG ...	LMT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
397188	150	CTG ...	LKR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, v6-5
398343	102	CTG ...	LKH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
1199321	57	AAG ...	KGT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
393897	183	ATG ...	MKS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
40540	216	CTG ...	LSD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
486292	42	CTG ...	LVV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
395533	63	ATG ...	MVV ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Spleen_B_cell, v6-5
486470	42	TTG ...	LGV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
40422	51	CTG ...	LKK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, E14, Testis, v6-5
713133	42	CTG ...	LTV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
484939	39	ATG ...	MGA ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
485716	66	ATG ...	MMV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
486533	63	GTG ...	VAN ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
1197060	75	AGG ...	RRK ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1196447	141	ATT ...	ILK ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
393685	54	CTG ...	LKI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
398196	126	ATG ...	MPP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
40788	117	GTG ...	VTL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	NSC, Spleen_B_cell, Testis
712928	36	GTG ...	VKK ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	NSC, v6-5
486125	51	CTG ...	LIV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
486278	72	TTG ...	LSV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
393219	111	CTG ...	LKL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
486483	39	GTG ...	VVR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
40436	66	GTG ...	VKK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	NSC, Spleen_B_cell, Testis, v6-5
397182	258	CTG ...	LRS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
484661	39	TTG ...	LYR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
485129	57	ATG ...	MTL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
715312	39	GTG ...	VTQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
40385	84	TTG ...	LEE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, Spleen_B_cell, Testis
393628	225	CTG ...	LKM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
394226	264	CTG ...	LTL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell, v6-5
395862	270	GTG ...	VTL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
484965	45	GTG ...	VWQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
1197912	111	ATA ...	IQT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
395758	57	GTG ...	VQP ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, Spleen_B_cell, v6-5
396947	63	TTG ...	LPA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
395925	201	ATG ...	MGA ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
40815	42	CTG ...	LFG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell, Testis, v6-5
395712	162	ATG ...	MPV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, v6-5
392776	39	GTG ...	VVS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
40397	240	GTG ...	VQN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis, v6-5
394239	105	CTG ...	LRT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	NSC, Spleen_B_cell
395993	213	CTG ...	LST ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
1197953	39	ACG ...	TSG ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
485296	42	ATG ...	MLY ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
713088	42	TTG ...	LEN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
398339	168	ATG ...	MGM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
485308	36	GTG ...	VTV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1198046	153	ATA ...	IRG ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
396487	231	GTG ...	VIL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
714168	222	GTG ...	VIL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
484975	60	GTG ...	VVQ ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5

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