Transcript 380439

Transcript

ID CARD

MetamORF ID

380439

ENSMUST00000135123

Name

Ppil1-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

29251264-29263912

CDS Start-stop positions

29262034-

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:68816

Aliases

1110060O10Rik,
AI327391, Cypl1, ENSMUSG00000024007,
MGI:1916066, NCBI:68816, OFF:Ppil1,
Ppil1

Chr 17

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
383263	108	GTG ...	VCQ ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	NMD sORF	B_cell, Brain, MEF
384069	138	CTG ...	LDG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	NMD sORF	B_cell, Brain, Spleen_B_cell
380438	78	GTG ...	VGM ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	NMD sORF	B_cell, Brain, E14, MEF
481082	39	ATG ...	MAN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	B_cell
479681	60	CTG ...	LGF ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
37544	117	TTG ...	LSW ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	NMD sORF	B_cell, Brain, Neutrophil, Spleen_B_cell
386834	42	GTG ...	VDD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
1191358	54	ATC ...	IEW ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	NMD sORF	E14
479183	87	GTG ...	VPG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
386221	69	GTG ...	VET ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	NMD sORF	B_cell, Brain, MEF
387832	33	CTG ...	LAA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	NMD sORF	3T3, B_cell, MEF
481314	117	CTG ...	LQE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	B_cell
478833	180	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, B_cell
797704	45	TTG ...	LDR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	B_cell
479802	174	TTG ...	LGA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	NMD sORF	B_cell, Spleen_B_cell
36917	39	ATG ...	MAP ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	NMD sORF	3T3, B_cell, Neutrophil, Spleen_B_cell
386223	156	CTG ...	LAP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	NMD sORF	B_cell, Brain
384435	87	GTG ...	VNR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	NMD sORF	B_cell, Brain, MEF, Spleen_B_cell
1190205	33	ATA ...	ILF ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	NMD sORF	E14
1192612	129	AAG ...	KHT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
480620	123	ATG ...	MAG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
36420	93	ATG ...	MRP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	NMD sORF	B_cell, Brain, Neutrophil, Spleen_B_cell
380680	33	GTG ...	VKI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	NMD sORF	Brain, E14
1192326	42	ACG ...	TAS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
1192805	96	ATA ...	IGM ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	NMD sORF	E14
479093	138	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	B_cell
386282	162	GTG ...	VTL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	NMD sORF	B_cell, Brain

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