Gene NCBI:68816 | MetamORF

Gene

ID CARD

NCBI:68816

Aliases

1110060O10Rik
AI327391, Cypl1, ENSMUSG00000024007
MGI:1916066, NCBI:68816, OFF:Ppil1
Ppil1

Chromosome

Transcripts

43 ORFs
4 known transcripts
75 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

478729

ENSMUST00000024802

Ppil1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
481314	117	CTG ...	LQE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
36420	93	ATG ...	MRP ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
483058	207	CTG ...	LSP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
387832	33	CTG ...	LAA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E, v6-5
480620	123	ATG ...	MAG ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
37544	117	TTG ...	LSW ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, R1E, v6-5
478728	132	GTG ...	VCP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E, Spleen_B_cell
479681	60	CTG ...	LGF ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
1195714	147	ACG ...	TST ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
481082	39	ATG ...	MAN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
479183	87	GTG ...	VPG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
709991	66	CTG ...	LGL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, R1E, v6-5
1047939	66	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Neutrophil
479093	138	CTG ...	LEA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
480616	54	GTG ...	VAH ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
36917	39	ATG ...	MAP ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E, v6-5
482129	90	GTG ...	VIA ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5

478622

ENSMUST00000136811

Ppil1-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
479681	60	CTG ...	LGF ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil, v6-5
479183	87	GTG ...	VPG ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Spleen_B_cell, v6-5
480620	123	ATG ...	MAG ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
384435	87	GTG ...	VNR ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, v6-5
479389	72	CTG ...	LIG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, Spleen_B_cell
380680	33	GTG ...	VKI ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
481082	39	ATG ...	MAN ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC, Spleen_B_cell, v6-5
797704	45	TTG ...	LDR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
480616	54	GTG ...	VAH ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
386221	69	GTG ...	VET ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Spleen_B_cell, v6-5
386282	162	GTG ...	VTL ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
383263	108	GTG ...	VCQ ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Spleen_B_cell, v6-5
380438	78	GTG ...	VGM ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Spleen_B_cell, v6-5
384069	138	CTG ...	LDG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Neutrophil, v6-5
386834	42	GTG ...	VDD ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
1360010	255	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
386223	156	CTG ...	LAP ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5

380439

ENSMUST00000135123

Ppil1-203

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
383263	108	GTG ...	VCQ ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	NMD sORF	B_cell, Brain, MEF
384069	138	CTG ...	LDG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	NMD sORF	B_cell, Brain, Spleen_B_cell
380438	78	GTG ...	VGM ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	NMD sORF	B_cell, Brain, E14, MEF
481082	39	ATG ...	MAN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	B_cell
479681	60	CTG ...	LGF ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
37544	117	TTG ...	LSW ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	NMD sORF	B_cell, Brain, Neutrophil, Spleen_B_cell
386834	42	GTG ...	VDD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
1191358	54	ATC ...	IEW ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	NMD sORF	E14
479183	87	GTG ...	VPG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
386221	69	GTG ...	VET ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	NMD sORF	B_cell, Brain, MEF
387832	33	CTG ...	LAA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	NMD sORF	3T3, B_cell, MEF
481314	117	CTG ...	LQE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	B_cell
478833	180	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, B_cell
797704	45	TTG ...	LDR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	B_cell
479802	174	TTG ...	LGA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	NMD sORF	B_cell, Spleen_B_cell
36917	39	ATG ...	MAP ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	NMD sORF	3T3, B_cell, Neutrophil, Spleen_B_cell
386223	156	CTG ...	LAP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	NMD sORF	B_cell, Brain
384435	87	GTG ...	VNR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	NMD sORF	B_cell, Brain, MEF, Spleen_B_cell
1190205	33	ATA ...	ILF ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	NMD sORF	E14
1192612	129	AAG ...	KHT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
480620	123	ATG ...	MAG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
36420	93	ATG ...	MRP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	NMD sORF	B_cell, Brain, Neutrophil, Spleen_B_cell
380680	33	GTG ...	VKI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	NMD sORF	Brain, E14
1192326	42	ACG ...	TAS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
1192805	96	ATA ...	IGM ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	NMD sORF	E14
479093	138	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	B_cell
386282	162	GTG ...	VTL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	NMD sORF	B_cell, Brain

36421

ENSMUST00000129157

Ppil1-202

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
36420	93	ATG ...	MRP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, Testis
38226	249	CTG ...	LEL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, Testis
483555	150	CTG ...	LQE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
481314	117	CTG ...	LQE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
38857	153	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Testis
1191867	51	ATT ...	IPP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
38862	204	CTG ...	LEL ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
387832	33	CTG ...	LAA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
484159	171	CTG ...	LEA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Spleen_B_cell
478833	180	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
36917	39	ATG ...	MAP ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
1195205	267	ATT ...	IPP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
479093	138	CTG ...	LEA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Spleen_B_cell
37544	117	TTG ...	LSW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis

2997323

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
36420	93	ATG ...	MRP ...	Predicted	ATG		1	Samandi2017	sORF
480620	123	ATG ...	MAG ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

43 ORFs
4 known transcripts
75 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

481314

117

CTG...

LQE...

CTG

Alternative
InCDS
Overlapping
sORF
ncRNA
NMD

3T3, Brain, E14,
MEF, R1E, v6-5,
Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

479681

CTG...

LGF...

CTG

Intronic
sORF
NMD
Alternative
InCDS
Overlapping

3T3, MEF, Neutrophil,
v6-5, Spleen_B_cell, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	strong	4	sORFs_org_Mouse
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

383263

108

GTG...

VCQ...

GTG

NMD
sORF
Intronic

B_cell, Brain, MEF,
3T3, E14, Liver,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	weak	7	sORFs_org_Mouse

36420

ATG...

MRP...

ATG

Alternative
InCDS
Overlapping
sORF
ncRNA
NMD

3T3, BMDC, E14,
Glioma, Liver, MEF,
MESC, R1E, v6-5,
Testis, B_cell,
Brain, Neutrophil, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq	moderate	8	sORFs_org_Mouse Johnstone2016
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq	moderate	2	sORFs_org_Mouse
2997323	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse

384069

138

CTG...

LDG...

CTG

NMD
sORF
Intronic

B_cell, Brain, Spleen_B_cell,
3T3, E14, Liver,
MEF, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	moderate	7	sORFs_org_Mouse

380438

GTG...

VGM...

GTG

NMD
sORF
Intronic

B_cell, Brain, E14,
MEF, 3T3, Liver,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	moderate	7	sORFs_org_Mouse

483058

207

CTG...

LSP...

CTG

InCDS
Overlapping
sORF

B_cell, Brain, E14,
MEF, R1E, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq		8	sORFs_org_Mouse

479183

GTG...

VPG...

GTG

Intronic
sORF
NMD
Alternative
InCDS
Overlapping

E14, MEF, Spleen_B_cell,
v6-5, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

387832

CTG...

LAA...

CTG

Alternative
InCDS
Overlapping
sORF
NMD
ncRNA

Brain, E14, MEF,
R1E, v6-5, 3T3,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq	moderate	2	sORFs_org_Mouse

480620

123

ATG...

MAG...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

E14, MEF, v6-5,
Glioma, Liver, MESC,
R1E, Spleen_B_cell,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse Johnstone2016
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
2997323	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

481082

ATG...

MAN...

ATG

NMD
sORF
Intronic
Alternative
InCDS
Overlapping

B_cell, 3T3, E14,
MEF, NSC, Spleen_B_cell,
v6-5, Glioma, Liver,
MESC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016

37544

117

TTG...

LSW...

TTG

NMD
sORF
Alternative
InCDS
Overlapping
ncRNA

B_cell, Brain, Neutrophil,
Spleen_B_cell, 3T3, E14,
MEF, R1E, v6-5,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	weak	4	sORFs_org_Mouse
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse

386834

GTG...

VDD...

GTG

NMD
sORF
Intronic

Brain, 3T3, E14,
MEF, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse

38226

249

CTG...

LEL...

CTG

ncRNA
sORF

E14, Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

483555

150

CTG...

LQE...

CTG

ncRNA
sORF

Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

384435

GTG...

VNR...

GTG

Intronic
sORF
NMD

3T3, E14, Liver,
MEF, v6-5, B_cell,
Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse

479389

CTG...

LIG...

CTG

Intronic
sORF

E14, MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq		3	sORFs_org_Mouse

38857

153

CTG...

LAR...

CTG

ncRNA
sORF

B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

1191867

ATT...

IPP...

ATT

ncRNA
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1191358

ATC...

IEW...

ATC

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

478728

132

GTG...

VCP...

GTG

Alternative
Overlapping
sORF
Upstream

R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

386221

GTG...

VET...

GTG

NMD
sORF
Intronic

B_cell, Brain, MEF,
3T3, E14, Liver,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	strong	7	sORFs_org_Mouse

1195714

147

ACG...

TST...

ACG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

380680

GTG...

VKI...

GTG

Intronic
sORF
NMD

3T3, E14, MEF,
Spleen_B_cell, v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

38862

204

CTG...

LEL...

CTG

ncRNA
sORF

B_cell, Brain, E14,
Neutrophil, R1E, Spleen_B_cell,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq		10	sORFs_org_Mouse

797704

TTG...

LDR...

TTG

Intronic
sORF
NMD

E14, MEF, v6-5,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq		3	sORFs_org_Mouse
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

478833

180

CTG...

LSP...

CTG

NMD
sORF
ncRNA

3T3, B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

480616

GTG...

VAH...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping

3T3, E14, MEF,
Spleen_B_cell, v6-5, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	strong	5	sORFs_org_Mouse
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

479802

174

TTG...

LGA...

TTG

NMD
sORF

B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse

36917

ATG...

MAP...

ATG

NMD
sORF
ncRNA
Alternative
InCDS
Overlapping

3T3, B_cell, Neutrophil,
Spleen_B_cell, Brain, Testis,
E14, MEF, NSC,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	strong	4	sORFs_org_Mouse
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq	strong	2	sORFs_org_Mouse
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq	strong	8	sORFs_org_Mouse

484159

171

CTG...

LEA...

CTG

ncRNA
sORF

B_cell, E14, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

386223

156

CTG...

LAP...

CTG

NMD
sORF
Intronic

B_cell, Brain, 3T3,
E14, Liver, MEF,
Neutrophil, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	strong	7	sORFs_org_Mouse

386282

162

GTG...

VTL...

GTG

Intronic
sORF
NMD

3T3, E14, Liver,
MEF, Neutrophil, Spleen_B_cell,
v6-5, B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq	weak	7	sORFs_org_Mouse
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

709991

CTG...

LGL...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
MEF, Neutrophil, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse

1047939

CTG...

LSS...

CTG

sORF
Upstream

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1190205

ATA...

ILF...

ATA

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

479093

138

CTG...

LEA...

CTG

Alternative
InCDS
Overlapping
sORF
ncRNA
NMD

3T3, Brain, E14,
MEF, R1E, v6-5,
Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1192612

129

AAG...

KHT...

AAG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1195205

267

ATT...

IPP...

ATT

ncRNA
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36421	ENSMUST00000129157	Ppil1-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1192326

ACG...

TAS...

ACG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1192805

ATA...

IGM...

ATA

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380439	ENSMUST00000135123	Ppil1-203	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

482129

GTG...

VIA...

GTG

Alternative
Overlapping
sORF
Upstream

3T3, B_cell, E14,
MEF, R1E, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478729	ENSMUST00000024802	Ppil1-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse

1360010

255

CTG...

LPA...

CTG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478622	ENSMUST00000136811	Ppil1-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

Export data