Transcript 3698 | MetamORF

Transcript

ID CARD

MetamORF ID

3698

ENSMUST00000161682

Name

Eif4g2-209

Strand

Biotype

retained_intron

Start-end positions

111077950-111079364

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:13690

Aliases

DAP-5,
E130105L11Rik, Eif4g2, ENSMUSG00000005610,
MGI:109207, Nat1, Natm1,
NCBI:13690, OFF:Eif4g2, p97

Chr 7

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
73966	66	TTG ...	LEN ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
228276	48	TTG ...	LIL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
212240	36	ATG ...	MSA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
74338	63	ATG ...	MHQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
877319	105	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1026143	216	GTG ...	VRT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
213042	57	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
224828	144	GTG ...	VKI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
533299	159	GTG ...	VDK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
877196	123	CTG ...	LYA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
227152	93	ATG ...	MLS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
531485	63	GTG ...	VGV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
4471	102	TTG ...	LLR ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, R1E
214049	51	TTG ...	LMA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
3697	126	CTG ...	LRR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E, Skin_tumor
74767	153	ATG ...	MIS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, R1E
596859	174	TTG ...	LPP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E

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