Transcript 355175

Transcript

ID CARD

MetamORF ID

355175

ENSMUST00000191436

Name

Ly6e-215

Strand

Biotype

protein_coding

Start-end positions

74955653-74959331

CDS Start-stop positions

74957808-74958713

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:17069

Aliases

ENSMUSG00000022587,
Ly67, Ly6e, MGI:106651,
NCBI:17069, OFF:Ly6e, RIG-E,
Sca-2, TSA-1, Tsa1

Chr 15

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
11583	69	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
1712027	39	ATG ...	MYI ...	Ribo-seq	ATG	weak	1	Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC
362666	60	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
32540	87	CTG ...	LPK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
31568	78	CTG ...	LAS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E
31306	90	CTG ...	LLP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
33090	129	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
31963	39	TTG ...	LRT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12
11922	165	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
30662	39	GTG ...	VKM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
11858	111	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
12041	156	ATG ...	MYR ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	BMDC, C2C12, Glioma, Liver, MEF, MESC, R1E
11762	36	CTG ...	LYH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
11998	111	ATG ...	MPG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, R1E
32147	72	CTG ...	LQL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E
11525	102	ATG ...	MYR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, R1E
31923	63	GTG ...	VPV ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E
31855	33	ATG ...	MSI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
11404	75	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
30547	39	TTG ...	LDS ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
1617439	111	GTG ...	VDT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
12086	90	CTG ...	LYH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, R1E
33037	123	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, R1E
11406	57	ATG ...	MPG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
1617450	102	CTG ...	LTR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1618699	93	ATG ...	MSN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
361340	111	TTG ...	LAC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12

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