Transcript 30823 | MetamORF

Transcript

ID CARD

MetamORF ID

30823

ENSMUST00000186927

Name

Ly6e-205

Strand

Biotype

retained_intron

Start-end positions

74955666-74959029

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:17069

Aliases

ENSMUSG00000022587,
Ly67, Ly6e, MGI:106651,
NCBI:17069, OFF:Ly6e, RIG-E,
Sca-2, TSA-1, Tsa1

Chr 15

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
850740	39	CTG ...	LLS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver
31855	33	ATG ...	MSI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
32110	198	CTG ...	LNK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Testis
361340	111	TTG ...	LAC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
30547	39	TTG ...	LDS ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver
32540	87	CTG ...	LPK ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver
852066	33	ATG ...	MQG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
850556	141	GTG ...	VAS ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver
11406	57	ATG ...	MPG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
11320	120	CTG ...	LMC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
11766	54	CTG ...	LGL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver
11858	111	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
11574	75	CTG ...	LWP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
32147	72	CTG ...	LQL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver
31923	63	GTG ...	VPV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Testis
31568	78	CTG ...	LAS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Testis
31963	39	TTG ...	LRT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
11404	75	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
11525	102	ATG ...	MYR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
30822	30	TTG ...	LLA ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Testis
30662	39	GTG ...	VKM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
31982	132	GTG ...	VNS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Testis
11583	69	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
11762	36	CTG ...	LYH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
31306	90	CTG ...	LLP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Testis

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