Transcript 30529 | MetamORF

Transcript

ID CARD

MetamORF ID

30529

ENSMUST00000162705

Name

Smdt1-205

Strand

Biotype

processed_transcript

Start-end positions

82340986-82349007

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:69029

Aliases

1500032L24Rik,
Emre, ENSMUSG00000022452, MGI:1916279,
NCBI:69029, OFF:Smdt1, Smdt1

Chr 15

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
30609	243	ATG ...	MRG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31165	96	ATG ...	MSG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
30528	150	TTG ...	LEA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
31066	198	CTG ...	LAW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32039	150	TTG ...	LQF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32138	96	ATG ...	MST ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
30622	213	GTG ...	VAP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32881	141	CTG ...	LMS ...	Ribo-seq	CTG		18	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
32587	300	GTG ...	VCV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32249	228	TTG ...	LDA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31201	147	CTG ...	LER ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31765	30	TTG ...	LVF ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
30568	39	TTG ...	LSQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31606	48	ATG ...	MTF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
1043981	138	ATG ...	MSF ...	Predicted	ATG	weak	1	Mackowiak2015	ncRNA sORF
32108	117	GTG ...	VFS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31193	234	GTG ...	VWL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31115	102	GTG ...	VAM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31373	279	GTG ...	VCH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
31346	129	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
31655	57	TTG ...	LRN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
30905	174	CTG ...	LGC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32475	105	GTG ...	VIP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31076	54	CTG ...	LLE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32536	243	CTG ...	LPE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32714	225	CTG ...	LWR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, NSC, Testis
32534	66	CTG ...	LLC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31800	168	GTG ...	VGI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis

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