Gene NCBI:69029 | MetamORF

Gene

ID CARD

NCBI:69029

Aliases

1500032L24Rik
Emre, ENSMUSG00000022452, MGI:1916279
NCBI:69029, OFF:Smdt1, Smdt1

Chromosome

Transcripts

39 ORFs
5 known transcripts
99 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

355021

ENSMUST00000023086

Smdt1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
30622	213	GTG ...	VAP ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
1182037	60	AGG ...	RYR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1182388	30	AGG ...	RMT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
365702	264	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
32138	96	ATG ...	MST ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
32249	228	TTG ...	LDA ...	Ribo-seq	TTG	optimal	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
31165	96	ATG ...	MSG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF
30905	174	CTG ...	LGC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
31115	102	GTG ...	VAM ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
32534	66	CTG ...	LLC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF
32039	150	TTG ...	LQF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
32536	243	CTG ...	LPE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
31606	48	ATG ...	MTF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, MEF
32587	300	GTG ...	VCV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
31201	147	CTG ...	LER ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
31193	234	GTG ...	VWL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
365099	294	ATG ...	MSG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
31655	57	TTG ...	LRN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF
30568	39	TTG ...	LSQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF
30609	243	ATG ...	MRG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14
31373	279	GTG ...	VCH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain

30529

ENSMUST00000162705

Smdt1-205

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
30609	243	ATG ...	MRG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31165	96	ATG ...	MSG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
30528	150	TTG ...	LEA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
31066	198	CTG ...	LAW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32039	150	TTG ...	LQF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32138	96	ATG ...	MST ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
30622	213	GTG ...	VAP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32881	141	CTG ...	LMS ...	Ribo-seq	CTG		18	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
32587	300	GTG ...	VCV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32249	228	TTG ...	LDA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31201	147	CTG ...	LER ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31765	30	TTG ...	LVF ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
30568	39	TTG ...	LSQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31606	48	ATG ...	MTF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
1043981	138	ATG ...	MSF ...	Predicted	ATG	weak	1	Mackowiak2015	ncRNA sORF
32108	117	GTG ...	VFS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31193	234	GTG ...	VWL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31115	102	GTG ...	VAM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31373	279	GTG ...	VCH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
31346	129	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
31655	57	TTG ...	LRN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
30905	174	CTG ...	LGC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32475	105	GTG ...	VIP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31076	54	CTG ...	LLE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32536	243	CTG ...	LPE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
32714	225	CTG ...	LWR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, NSC, Testis
32534	66	CTG ...	LLC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
31800	168	GTG ...	VGI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis

32920

ENSMUST00000160994

Smdt1-203

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
30609	243	ATG ...	MRG ...	Ribo-seq	ATG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
31066	198	CTG ...	LAW ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
31373	279	GTG ...	VCH ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, Neutrophil, Spleen_B_cell
363977	237	TTG ...	LSQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
32475	105	GTG ...	VIP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Spleen_B_cell
950260	252	AGG ...	RNM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
32919	228	GTG ...	VRA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, Testis
31115	102	GTG ...	VAM ...	Ribo-seq	GTG		12	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
32108	117	GTG ...	VFS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Spleen_B_cell
1043981	138	ATG ...	MSF ...	Predicted	ATG	weak	1	Mackowiak2015	ncRNA sORF
948848	54	AGG ...	RNM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
31193	234	GTG ...	VWL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell
33172	216	CTG ...	LCL ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Testis
1453174	63	GTG ...	VVA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
32536	243	CTG ...	LPE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell
31606	48	ATG ...	MTF ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Spleen_B_cell
31800	168	GTG ...	VGI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
30528	150	TTG ...	LEA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
32587	300	GTG ...	VCV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, Neutrophil, Spleen_B_cell
32039	150	TTG ...	LQF ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
31765	30	TTG ...	LVF ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Spleen_B_cell
30905	174	CTG ...	LGC ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
31201	147	CTG ...	LER ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell
31346	129	CTG ...	LVS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Spleen_B_cell
32534	66	CTG ...	LLC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Spleen_B_cell
32138	96	ATG ...	MST ...	Ribo-seq	ATG		13	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
31165	96	ATG ...	MSG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Spleen_B_cell
948432	213	ACG ...	TAA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
31655	57	TTG ...	LRN ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Spleen_B_cell
32249	228	TTG ...	LDA ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell
30568	39	TTG ...	LSQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Spleen_B_cell
30622	213	GTG ...	VAP ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
31076	54	CTG ...	LLE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Spleen_B_cell

357951

ENSMUST00000159054

Smdt1-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
31765	30	TTG ...	LVF ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, v6-5
31655	57	TTG ...	LRN ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, v6-5
1043981	138	ATG ...	MSF ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative CDS sORF	BMDC, E14, MEF, Neutrophil, NSC, v6-5
30568	39	TTG ...	LSQ ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Downstream Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
31165	96	ATG ...	MSG ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, v6-5
31606	48	ATG ...	MTF ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, v6-5
32534	66	CTG ...	LLC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, v6-5

421353

ENSMUST00000161892

Smdt1-204

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
31655	57	TTG ...	LRN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
32108	117	GTG ...	VFS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF
31165	96	ATG ...	MSG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
32138	96	ATG ...	MST ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	C2C12, MEF
31115	102	GTG ...	VAM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
31606	48	ATG ...	MTF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
31076	54	CTG ...	LLE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
32534	66	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
32475	105	GTG ...	VIP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF
30568	39	TTG ...	LSQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF

3305095

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
365099	294	ATG ...	MSG ...	Predicted	ATG		1	Samandi2017	sORF
32138	96	ATG ...	MST ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

39 ORFs
5 known transcripts
99 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

30622

213

GTG...

VAP...

GTG

Alternative
Overlapping
sORF
Upstream
ncRNA

Brain, 3T3, R1E,
Testis, B_cell, BMDC,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		10	sORFs_org_Mouse

30609

243

ATG...

MRG...

ATG

ncRNA
sORF
Alternative
Overlapping
Upstream

3T3, R1E, Testis,
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		10	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1182037

AGG...

RYR...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

31165

ATG...

MSG...

ATG

ncRNA
sORF
Alternative
Downstream
NMD
Overlapping

3T3, R1E, Testis,
MEF, Brain, BMDC,
E14, Neutrophil, NSC,
v6-5, B_cell, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
421353	ENSMUST00000161892	Smdt1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
357951	ENSMUST00000159054	Smdt1-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		5	sORFs_org_Mouse

31066

198

CTG...

LAW...

CTG

ncRNA
sORF

B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5, 3T3, R1E,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		11	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

31373

279

GTG...

VCH...

GTG

ncRNA
sORF
Alternative
Overlapping
Upstream

B_cell, BMDC, Brain,
MEF, Neutrophil, Spleen_B_cell,
3T3, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		6	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

30528

150

TTG...

LEA...

TTG

ncRNA
sORF

Testis, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

32039

150

TTG...

LQF...

TTG

ncRNA
sORF
Alternative
InCDS
Overlapping

3T3, R1E, Testis,
Brain, B_cell, BMDC,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		11	sORFs_org_Mouse

363977

237

TTG...

LSQ...

TTG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

32138

ATG...

MST...

ATG

ncRNA
sORF
Alternative
InCDS
Overlapping
NMD

3T3, R1E, Testis,
Brain, E14, MEF,
C2C12, B_cell, BMDC,
Liver, Neutrophil, NSC,
Spleen_B_cell, v6-5,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
421353	ENSMUST00000161892	Smdt1-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		13	sORFs_org_Mouse
3305095	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

32881

141

CTG...

LMS...

CTG

ncRNA
sORF

3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		18	sORFs_org_Mouse

32475

105

GTG...

VIP...

GTG

ncRNA
sORF
Alternative
Downstream
NMD
Overlapping

B_cell, Brain, Liver,
Spleen_B_cell, 3T3, R1E,
Testis, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq	moderate	5	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse
421353	ENSMUST00000161892	Smdt1-204	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

31765

TTG...

LVF...

TTG

InCDS
Overlapping
sORF
ncRNA

BMDC, E14, v6-5,
3T3, R1E, Testis,
Brain, Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
357951	ENSMUST00000159054	Smdt1-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq	moderate	5	sORFs_org_Mouse

32587

300

GTG...

VCV...

GTG

ncRNA
sORF
Alternative
Overlapping
Upstream

3T3, R1E, Testis,
B_cell, Brain, MEF,
Neutrophil, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		5	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

950260

252

AGG...

RNM...

AGG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1182388

AGG...

RMT...

AGG

Alternative
Downstream
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

32919

228

GTG...

VRA...

GTG

ncRNA
sORF

Brain, Liver, Neutrophil,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		5	sORFs_org_Mouse

365702

264

CTG...

LLC...

CTG

Alternative
Downstream
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

32249

228

TTG...

LDA...

TTG

ncRNA
sORF
Alternative
Overlapping
Upstream

3T3, R1E, Testis,
Brain, B_cell, BMDC,
E14, Liver, MEF,
Neutrophil, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq	optimal	1	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

31115

102

GTG...

VAM...

GTG

ncRNA
sORF
Alternative
InCDS
Overlapping
NMD

B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5, 3T3, R1E,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		12	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
421353	ENSMUST00000161892	Smdt1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

32108

117

GTG...

VFS...

GTG

ncRNA
sORF
Alternative
Downstream
NMD
Overlapping

B_cell, Brain, Liver,
Spleen_B_cell, MEF, 3T3,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq	weak	5	sORFs_org_Mouse
421353	ENSMUST00000161892	Smdt1-204	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq	weak	3	sORFs_org_Mouse

1043981

138

ATG...

MSF...

ATG

ncRNA
sORF
Alternative
CDS

BMDC, E14,
MEF, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Predicted	weak	1	Mackowiak2015
357951	ENSMUST00000159054	Smdt1-202	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Predicted	weak	1	Mackowiak2015

31655

TTG...

LRN...

TTG

Alternative
Downstream
NMD
sORF
Overlapping
ncRNA

MEF, BMDC, Brain,
E14, Neutrophil, NSC,
v6-5, 3T3, R1E,
Testis, B_cell, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
421353	ENSMUST00000161892	Smdt1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
357951	ENSMUST00000159054	Smdt1-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		5	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

948848

AGG...

RNM...

AGG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

31201

147

CTG...

LER...

CTG

ncRNA
sORF
Alternative
InCDS
Overlapping

3T3, R1E, Testis,
B_cell, BMDC, Brain,
E14, MEF, Neutrophil,
NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		8	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

31193

234

GTG...

VWL...

GTG

ncRNA
sORF
Alternative
Overlapping
Upstream

B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, Spleen_B_cell, 3T3,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		8	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

33172

216

CTG...

LCL...

CTG

ncRNA
sORF

BMDC, Brain, Liver,
MEF, Neutrophil, NSC,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		10	sORFs_org_Mouse

30568

TTG...

LSQ...

TTG

ncRNA
sORF
Downstream
Overlapping
Alternative
NMD

3T3, R1E, Testis,
Brain, E14, MEF,
Neutrophil, NSC, v6-5,
B_cell, Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
357951	ENSMUST00000159054	Smdt1-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		4	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
421353	ENSMUST00000161892	Smdt1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

30905

174

CTG...

LGC...

CTG

Alternative
InCDS
Overlapping
sORF
ncRNA

Brain, B_cell, BMDC,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
3T3, R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		9	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

1453174

GTG...

VVA...

GTG

ncRNA
sORF

BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

31606

ATG...

MTF...

ATG

ncRNA
sORF
Alternative
Downstream
NMD
Overlapping

3T3, R1E, Testis,
B_cell, Brain, Liver,
Spleen_B_cell, MEF, BMDC,
E14, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		5	sORFs_org_Mouse
421353	ENSMUST00000161892	Smdt1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
357951	ENSMUST00000159054	Smdt1-202	protein_coding	Ribo-seq		8	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

32536

243

CTG...

LPE...

CTG

ncRNA
sORF
Alternative
Overlapping
Upstream

B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, Spleen_B_cell, 3T3,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		8	sORFs_org_Mouse
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

31800

168

GTG...

VGI...

GTG

ncRNA
sORF

Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

32534

CTG...

LLC...

CTG

Alternative
Downstream
Overlapping
sORF
ncRNA
NMD

Brain, MEF, B_cell,
Liver, Spleen_B_cell, BMDC,
E14, Neutrophil, NSC,
v6-5, 3T3, R1E,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		5	sORFs_org_Mouse
357951	ENSMUST00000159054	Smdt1-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse
421353	ENSMUST00000161892	Smdt1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

31346

129

CTG...

LVS...

CTG

ncRNA
sORF

Brain, Liver, Spleen_B_cell,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

365099

294

ATG...

MSG...

ATG

sORF
Alternative
Downstream
Overlapping

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3305095	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
355021	ENSMUST00000023086	Smdt1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

948432

213

ACG...

TAA...

ACG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

31076

CTG...

LLE...

CTG

ncRNA
sORF
Alternative
Downstream
NMD

3T3, R1E, Testis,
MEF, B_cell, Brain,
Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse
421353	ENSMUST00000161892	Smdt1-204	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
32920	ENSMUST00000160994	Smdt1-203	processed_transcript	Ribo-seq	moderate	5	sORFs_org_Mouse

32714

225

CTG...

LWR...

CTG

ncRNA
sORF

Brain, Liver, Neutrophil,
NSC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30529	ENSMUST00000162705	Smdt1-205	processed_transcript	Ribo-seq		6	sORFs_org_Mouse

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