Transcript 292289

Transcript

ID CARD

MetamORF ID

292289

ENSMUST00000109601

Name

Rab1a-202

Strand

Biotype

protein_coding

Start-end positions

20201439-20225464

CDS Start-stop positions

20201639-20224845

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:19324

Aliases

ENSMUSG00000020149,
Gtbp, MGI:97842, mKIAA3012,
NCBI:19324, OFF:Rab1a, Rab-1,
Rab1, Rab1a, Ypt1

Chr 11

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
937585	105	ATT ...	ILG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
937942	36	ATC ...	IPN ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
18633	165	CTG ...	LRL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain
91571	90	GTG ...	VAR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain
18949	42	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
304812	45	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	BMDC
8572	51	TTG ...	LAI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
20568	171	GTG ...	VAA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
933147	42	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
9198	111	TTG ...	LAI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
8882	63	ATG ...	MIR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
21945	48	GTG ...	VVA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain
934404	72	ACG ...	TNY ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
312294	108	ATG ...	MLK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream Overlapping sORF	Brain
9175	102	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
931896	36	ATC ...	ITE ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
17453	36	TTG ...	LES ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
931355	54	ATT ...	IPL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
310918	54	TTG ...	LCS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
91669	135	GTG ...	VGS ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
18104	78	CTG ...	LWR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
21713	141	CTG ...	LEL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain
8641	30	TTG ...	LVW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
90887	48	TTG ...	LEF ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain
9588	96	TTG ...	LES ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
91452	51	CTG ...	LRQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
18933	63	TTG ...	LGR ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
933757	45	ATT ...	ILG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
91844	60	TTG ...	LQI ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain
935703	126	ACG ...	TFA ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
20175	45	GTG ...	VAA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain
294343	129	CTG ...	LVV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	Brain, Liver

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