Transcript 2771 | MetamORF

Transcript

ID CARD

MetamORF ID

2771

ENSMUST00000032183

Name

Tmem43-201

Strand

Biotype

protein_coding

Start-end positions

91473703-91488463

CDS Start-stop positions

91473887-91486947

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

NCBI:74122

Aliases

1200015A22Rik,
ENSMUSG00000030095, LUMA, MGI:1921372,
NCBI:74122, OFF:Tmem43, Tmem43

Chr 6

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3153	36	GTG ...	VEV ...	Ribo-seq	GTG	strong	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, Skin_tumor
908645	39	ATT ...	IPV ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
585041	126	TTG ...	LAT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF
580058	156	CTG ...	LRP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
579706	33	ATG ...	MCE ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
201914	120	TTG ...	LQL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain
582073	36	GTG ...	VMC ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, v6-5
201385	39	CTG ...	LAG ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
197098	84	CTG ...	LDS ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	sORF Upstream	B_cell, Brain, E14, Spleen_B_cell
3102	33	ATG ...	MTL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Skin_tumor
208000	39	ATG ...	MTL ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
584256	192	CTG ...	LRP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF
204136	51	TTG ...	LQR ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF
196048	114	TTG ...	LSC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF
587193	63	GTG ...	VKT ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, v6-5
1514431	45	TTG ...	LHG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream Overlapping sORF	NSC
911227	180	AGG ...	RSW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
911241	99	ATT ...	IPS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
910550	171	ATT ...	IPR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
209419	156	TTG ...	LQL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, MEF, v6-5
199683	42	CTG ...	LLA ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, v6-5
525391	30	CTG ...	LRS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
525548	33	CTG ...	LSP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
910554	87	ATA ...	IEQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
907742	63	ATT ...	IPS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1248453	63	ATT ...	IPP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
579409	39	CTG ...	LDG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
525311	36	CTG ...	LTQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
575859	30	TTG ...	LTR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
192547	60	ATG ...	MDG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, NSC
585693	102	ATG ...	MWT ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, v6-5
196580	33	CTG ...	LSS ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
198843	48	CTG ...	LWL ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, v6-5
2770	81	ATG ...	MGP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Skin_tumor
587214	138	TTG ...	LTE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF
1248032	51	ATA ...	IEQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
208900	66	ATG ...	MWR ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, Neutrophil, v6-5
582909	33	GTG ...	VRL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
578520	132	TTG ...	LRL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, Neutrophil
575291	39	TTG ...	LVM ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, v6-5
586506	156	TTG ...	LST ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF
1249485	96	ATT ...	IPP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
415434	57	CTG ...	LWQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	B_cell, E14, Spleen_B_cell

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