Transcript 254437

Transcript

ID CARD

MetamORF ID

254437

ENSMUST00000130368

Name

Wdr61-205

Strand

Biotype

protein_coding

Start-end positions

54717159-54734497

CDS Start-stop positions

54717346-54727613

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:66317

Aliases

2700038L12Rik,
2810418I05Rik, ENSMUSG00000061559, MGI:1917493,
NCBI:66317, OFF:Wdr61, REC14,
Wdr61

Chr 9

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
6220	102	ATG ...	MRG ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
274315	93	TTG ...	LFP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF Upstream	3T3, Brain, MEF, R1E
255020	48	GTG ...	VVT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, R1E
261456	84	ATG ...	MPY ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E
1274204	81	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
436375	33	CTG ...	LDD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
268729	42	ATG ...	MVS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	sORF Upstream	Glioma, Liver, MEF, MESC
6079	54	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	MEF, R1E
265303	30	CTG ...	LGD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
626592	84	ATG ...	MQD ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
6445	153	GTG ...	VEP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Overlapping sORF Upstream	Brain, MEF, R1E
924020	99	CTG ...	LCG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
759430	30	ATG ...	MGN ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
270371	96	GTG ...	VLF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF Upstream	3T3, MEF, R1E
627336	60	ATG ...	MLR ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
257815	87	ATG ...	MMP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E
258911	90	ATG ...	MMM ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, Glioma, Liver, MEF, MESC, R1E
264375	69	TTG ...	LPG ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, R1E
626595	99	CTG ...	LVL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	3T3, MEF, R1E

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