Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:66317

Aliases

2700038L12Rik
2810418I05Rik, ENSMUSG00000061559, MGI:1917493
NCBI:66317, OFF:Wdr61, REC14
Wdr61

Chromosome

9

Transcripts

50 ORFs
7 known transcripts
98 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

84533 ENSMUST00000051822 Wdr61-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

763343 39

CTG ...

LCG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, Liver
625813 57

TTG ...

LRS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
268008 72

ATG ...

MLE ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, v6-5
1114816 45

TTG ...

LRS ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
923342 63

GTG ...

VVS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
269324 69

TTG ...

LEQ ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, v6-5
627336 60

ATG ...

MLR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1114247 33

CTG ...

LMT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, v6-5
1113936 48

ATG ...

MLR ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
922791 87

CTG ...

LYG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
1114090 42

TTG ...

LGC ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
6079 54

CTG ...

LGL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Testis
6445 153

GTG ...

VEP ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
257815 87

ATG ...

MMP ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Liver
268729 42

ATG ...

MVS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
924881 102

GTG ...

VLC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
258911 90

ATG ...

MMM ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver
261456 84

ATG ...

MPY ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1524424 54

ATG ...

MAT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
5910 ENSMUST00000118771 Wdr61-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

5909 105

GTG ...

VMR ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Skin_tumor
624134 45

CTG ...

LTP ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
627336 60

ATG ...

MLR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver
6445 153

GTG ...

VEP ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver, Skin_tumor
625109 36

TTG ...

LEA ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, R1E
626201 36

ATG ...

MMY ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver
268729 42

ATG ...

MVS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
1033811 204

TTG ...

LKI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    CDS
    sORF
Brain
257815 87

ATG ...

MMP ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, C2C12
626592 84

ATG ...

MQD ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
620087 30

CTG ...

LGV ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
6079 54

CTG ...

LGL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver, Skin_tumor
264375 69

TTG ...

LPG ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
624472 30

ATG ...

MVV ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    sORF
    Upstream
3T3
6220 102

ATG ...

MRG ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
437569 39

TTG ...

LKQ ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver
990277 60

CTG ...

LTD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
265303 30

CTG ...

LGD ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
626555 54

CTG ...

LES ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
261456 84

ATG ...

MPY ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
258911 90

ATG ...

MMM ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
625647 87

CTG ...

LTP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
625813 57

TTG ...

LRS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver
254437 ENSMUST00000130368 Wdr61-205 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

6220 102

ATG ...

MRG ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    sORF
    Upstream
Glioma, Liver, MEF,
MESC
274315 93

TTG ...

LFP ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    sORF
    Upstream
3T3, Brain, MEF,
R1E
255020 48

GTG ...

VVT ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Brain, R1E
261456 84

ATG ...

MPY ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, R1E
1274204 81

CTG ...

LTP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
436375 33

CTG ...

LDD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
R1E
268729 42

ATG ...

MVS ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    sORF
    Upstream
Glioma, Liver, MEF,
MESC
6079 54

CTG ...

LGL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
MEF, R1E
265303 30

CTG ...

LGD ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
Brain
626592 84

ATG ...

MQD ...

Ribo-seq
ATG

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
6445 153

GTG ...

VEP ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
Brain, MEF, R1E
924020 99

CTG ...

LCG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
    Upstream
BMDC, E14
759430 30

ATG ...

MGN ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
270371 96

GTG ...

VLF ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, MEF, R1E
627336 60

ATG ...

MLR ...

Ribo-seq
ATG

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
257815 87

ATG ...

MMP ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, R1E
258911 90

ATG ...

MMM ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    sORF
    Upstream
3T3, Glioma, Liver,
MEF, MESC, R1E
264375 69

TTG ...

LPG ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Brain, R1E
626595 99

CTG ...

LVL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, MEF, R1E
760383 ENSMUST00000121204 Wdr61-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

257815 87

ATG ...

MMP ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14
624472 30

ATG ...

MVV ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
6445 153

GTG ...

VEP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain
261456 84

ATG ...

MPY ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
1571487 48

CTG ...

LWT ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1274204 81

CTG ...

LTP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
6220 102

ATG ...

MRG ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
6079 54

CTG ...

LGL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF
258911 90

ATG ...

MMM ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
5909 105

GTG ...

VMR ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
762587 33

CTG ...

LMG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
264375 69

TTG ...

LPG ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
270372 ENSMUST00000127451 Wdr61-204 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

261456 84

ATG ...

MPY ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    sORF
Neutrophil, NSC, Spleen_B_cell
255020 48

GTG ...

VVT ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    sORF
Liver, MEF, NSC,
Spleen_B_cell, v6-5
6079 54

CTG ...

LGL ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    sORF
E14, Liver, MEF,
NSC, Spleen_B_cell, v6-5
6445 153

GTG ...

VEP ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    sORF
E14, Liver, MEF,
NSC, Spleen_B_cell, v6-5
626595 99

CTG ...

LVL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    sORF
B_cell, Liver, NSC,
v6-5
1524504 60

CTG ...

LTD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
NSC
274315 93

TTG ...

LFP ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    sORF
B_cell, E14, Liver,
MEF, Neutrophil, NSC,
v6-5
436375 33

CTG ...

LDD ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
Liver, Spleen_B_cell, v6-5
270371 96

GTG ...

VLF ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    sORF
B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, v6-5
437569 39

TTG ...

LKQ ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    sORF
E14, Spleen_B_cell
264375 69

TTG ...

LPG ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    sORF
E14, Spleen_B_cell
257815 87

ATG ...

MMP ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    sORF
Neutrophil, NSC, Spleen_B_cell
258911 90

ATG ...

MMM ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    sORF
Neutrophil, NSC, Spleen_B_cell
3049179 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

6220 102

ATG ...

MRG ...

Predicted
ATG

1 Samandi2017
    sORF
258911 90

ATG ...

MMM ...

Predicted
ATG

1 Samandi2017
    sORF
759431 ENSMUST00000148494 Wdr61-207 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

762587 33

CTG ...

LMG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
762394 75

TTG ...

LTF ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Liver
759430 30

ATG ...

MGN ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Liver
1269048 ENSMUST00000144365 Wdr61-206 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1274184 105

TTG ...

LAG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, R1E
1114090 42

TTG ...

LGC ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1113936 48

ATG ...

MLR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
620087 30

CTG ...

LGV ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1829244 72

GTG ...

VLN ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1114247 33

CTG ...

LMT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, R1E
1114816 45

TTG ...

LRS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, R1E
1831031 30

ATG ...

MTL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1828673 93

CTG ...

LSG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E

ORFs

50 ORFs
7 known transcripts
98 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

763343 39

CTG...

LCG...

CTG Alternative
sORF
Upstream
B_cell, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
5909 105

GTG...

VMR...

GTG Alternative
InCDS
Overlapping
sORF
3T3, Skin_tumor, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
760383 ENSMUST00000121204 Wdr61-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
6220 102

ATG...

MRG...

ATG Alternative
sORF
Upstream
InCDS
Overlapping
Glioma, Liver, MEF,
MESC, Skin_tumor,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
moderate 1 Johnstone2016
3049179 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
760383 ENSMUST00000121204 Wdr61-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
257815 87

ATG...

MMP...

ATG Alternative
InCDS
Overlapping
sORF
Upstream
B_cell, E14, Brain,
C2C12, BMDC, Liver,
3T3, R1E, Neutrophil,
NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

760383 ENSMUST00000121204 Wdr61-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
270372 ENSMUST00000127451 Wdr61-204 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
624134 45

CTG...

LTP...

CTG Alternative
InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
274315 93

TTG...

LFP...

TTG sORF
Upstream
3T3, Brain, MEF,
R1E, B_cell, E14,
Liver, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
4 sORFs_org_Mouse
270372 ENSMUST00000127451 Wdr61-204 protein_coding Ribo-seq
7 sORFs_org_Mouse
627336 60

ATG...

MLR...

ATG InCDS
Overlapping
sORF
Alternative
3T3, Liver, MEF,
v6-5, Glioma, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
1 Johnstone2016
625813 57

TTG...

LRS...

TTG Alternative
InCDS
Overlapping
sORF
MEF, v6-5, 3T3,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
6445 153

GTG...

VEP...

GTG Alternative
InCDS
Overlapping
sORF
Upstream
3T3, Liver, Skin_tumor,
B_cell, Brain, E14,
MEF, NSC, Spleen_B_cell,
v6-5, Testis, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
760383 ENSMUST00000121204 Wdr61-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
270372 ENSMUST00000127451 Wdr61-204 protein_coding Ribo-seq
7 sORFs_org_Mouse
84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
3 sORFs_org_Mouse
255020 48

GTG...

VVT...

GTG Alternative
sORF
Upstream
3T3, Brain, R1E,
Liver, MEF, NSC,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
3 sORFs_org_Mouse
270372 ENSMUST00000127451 Wdr61-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
261456 84

ATG...

MPY...

ATG sORF
Alternative
Upstream
InCDS
Overlapping
Neutrophil, NSC, Spleen_B_cell,
3T3, R1E, B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

270372 ENSMUST00000127451 Wdr61-204 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
760383 ENSMUST00000121204 Wdr61-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
268008 72

ATG...

MLE...

ATG Alternative
InCDS
Overlapping
sORF
Brain, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
625109 36

TTG...

LEA...

TTG sORF
Upstream
3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
762587 33

CTG...

LMG...

CTG Intronic
sORF
InCDS
Overlapping
B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

759431 ENSMUST00000148494 Wdr61-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
760383 ENSMUST00000121204 Wdr61-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1114816 45

TTG...

LRS...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
E14, MEF, NSC,
v6-5, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1269048 ENSMUST00000144365 Wdr61-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
1274204 81

CTG...

LTP...

CTG Alternative
InCDS
Overlapping
sORF
R1E, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
760383 ENSMUST00000121204 Wdr61-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
436375 33

CTG...

LDD...

CTG Alternative
sORF
Upstream
R1E, Liver, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
270372 ENSMUST00000127451 Wdr61-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
923342 63

GTG...

VVS...

GTG Alternative
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
626201 36

ATG...

MMY...

ATG InCDS
Overlapping
sORF
3T3, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1274184 105

TTG...

LAG...

TTG Intronic
sORF
E14, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1269048 ENSMUST00000144365 Wdr61-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
268729 42

ATG...

MVS...

ATG Alternative
InCDS
Overlapping
sORF
Upstream
Liver, Glioma, MEF,
MESC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
moderate 1 Johnstone2016
84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1033811 204

TTG...

LKI...

TTG CDS
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
626592 84

ATG...

MQD...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
1 Johnstone2016
624472 30

ATG...

MVV...

ATG Alternative
sORF
Upstream
B_cell, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

760383 ENSMUST00000121204 Wdr61-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
762394 75

TTG...

LTF...

TTG Intronic
sORF
B_cell, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

759431 ENSMUST00000148494 Wdr61-207 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
269324 69

TTG...

LEQ...

TTG Alternative
InCDS
Overlapping
sORF
Brain, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
620087 30

CTG...

LGV...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1269048 ENSMUST00000144365 Wdr61-206 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
258911 90

ATG...

MMM...

ATG sORF
Alternative
InCDS
Overlapping
Upstream
Brain, Liver,
B_cell, 3T3, Glioma,
MEF, MESC, R1E,
Neutrophil, NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3049179 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
760383 ENSMUST00000121204 Wdr61-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
Johnstone2016
270372 ENSMUST00000127451 Wdr61-204 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1114090 42

TTG...

LGC...

TTG Intronic
sORF
Alternative
InCDS
Overlapping
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1269048 ENSMUST00000144365 Wdr61-206 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1114247 33

CTG...

LMT...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
NSC, v6-5, E14,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1269048 ENSMUST00000144365 Wdr61-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
6079 54

CTG...

LGL...

CTG Alternative
InCDS
Overlapping
sORF
Upstream
3T3, Liver, Skin_tumor,
E14, MEF, NSC,
Spleen_B_cell, v6-5, R1E,
Brain, Testis, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
270372 ENSMUST00000127451 Wdr61-204 protein_coding Ribo-seq
7 sORFs_org_Mouse
254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
760383 ENSMUST00000121204 Wdr61-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
264375 69

TTG...

LPG...

TTG Alternative
InCDS
Overlapping
sORF
Upstream
Brain, E14, Spleen_B_cell,
3T3, R1E, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
270372 ENSMUST00000127451 Wdr61-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
760383 ENSMUST00000121204 Wdr61-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1113936 48

ATG...

MLR...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
E14, MEF, NSC,
v6-5, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1269048 ENSMUST00000144365 Wdr61-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
1571487 48

CTG...

LWT...

CTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

760383 ENSMUST00000121204 Wdr61-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
437569 39

TTG...

LKQ...

TTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
Liver, E14, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
270372 ENSMUST00000127451 Wdr61-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1829244 72

GTG...

VLN...

GTG Intronic
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1269048 ENSMUST00000144365 Wdr61-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
922791 87

CTG...

LYG...

CTG sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
265303 30

CTG...

LGD...

CTG sORF
Upstream
Alternative
InCDS
Overlapping
Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
990277 60

CTG...

LTD...

CTG Alternative
InCDS
Overlapping
sORF
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
626595 99

CTG...

LVL...

CTG sORF
Upstream
B_cell, Liver, NSC,
v6-5, 3T3, MEF,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

270372 ENSMUST00000127451 Wdr61-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
3 sORFs_org_Mouse
1524504 60

CTG...

LTD...

CTG sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

270372 ENSMUST00000127451 Wdr61-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
924020 99

CTG...

LCG...

CTG sORF
Upstream
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
924881 102

GTG...

VLC...

GTG sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
759430 30

ATG...

MGN...

ATG InCDS
Overlapping
sORF
Intronic
Glioma, Liver, MEF,
MESC, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
moderate 1 Johnstone2016
759431 ENSMUST00000148494 Wdr61-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
270371 96

GTG...

VLF...

GTG sORF
Upstream
3T3, MEF, R1E,
B_cell, Brain, E14,
Liver, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

254437 ENSMUST00000130368 Wdr61-205 protein_coding Ribo-seq
3 sORFs_org_Mouse
270372 ENSMUST00000127451 Wdr61-204 protein_coding Ribo-seq
8 sORFs_org_Mouse
1524424 54

ATG...

MAT...

ATG Alternative
InCDS
Overlapping
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

84533 ENSMUST00000051822 Wdr61-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
626555 54

CTG...

LES...

CTG InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1831031 30

ATG...

MTL...

ATG Intronic
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1269048 ENSMUST00000144365 Wdr61-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
1828673 93

CTG...

LSG...

CTG Intronic
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1269048 ENSMUST00000144365 Wdr61-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
625647 87

CTG...

LTP...

CTG InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5910 ENSMUST00000118771 Wdr61-202 protein_coding Ribo-seq
1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5