Transcript 236171

Transcript

ID CARD

MetamORF ID

236171

ENSMUST00000128822

Name

Cope-203

Strand

Biotype

retained_intron

Start-end positions

70302793-70306922

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:59042

Aliases

1110005D17Rik,
Cope, Cope1, ENSMUSG00000055681,
MGI:1891702, NCBI:59042, OFF:Cope

Chr 8

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
247536	108	GTG ...	VTN ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
1028847	171	CTG ...	LFD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
240325	156	TTG ...	LQG ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
242018	147	GTG ...	VLE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
246859	39	CTG ...	LRT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
81837	54	GTG ...	VTW ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, R1E
242710	36	ATG ...	MSS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, R1E
79124	93	GTG ...	VVL ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, R1E
81677	33	CTG ...	LAR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, R1E
5155	36	GTG ...	VTV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
78524	45	GTG ...	VRM ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, R1E
241823	138	CTG ...	LDR ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
238633	114	GTG ...	VDV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
238875	171	GTG ...	VSS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
236170	30	CTG ...	LHQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
249739	144	CTG ...	LEL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
754215	114	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
81158	87	CTG ...	LDE ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, R1E
1030646	162	GTG ...	VKN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
238268	90	CTG ...	LLM ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, R1E

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