Gene NCBI:59042 | MetamORF

Gene

ID CARD

NCBI:59042

Aliases

1110005D17Rik
Cope, Cope1, ENSMUSG00000055681
MGI:1891702, NCBI:59042, OFF:Cope

Chromosome

Transcripts

80 ORFs
8 known transcripts
183 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

238175

ENSMUST00000066469

Cope-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
613411	150	ATG ...	MAR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, R1E
250249	168	ATG ...	MSS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
757710	48	GTG ...	VRT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
881432	39	TTG ...	LYC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
238174	63	CTG ...	LGD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
246556	39	CTG ...	LQR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
247540	156	GTG ...	VRS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
882915	225	GTG ...	VRS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
882499	114	ATG ...	MRS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, MEF
5578	30	GTG ...	VCC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
241566	60	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1579936	45	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
882370	66	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
882583	78	CTG ...	LCA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver
81837	54	GTG ...	VTW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
243751	84	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1569778	258	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
758240	54	TTG ...	LPV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
242710	36	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
79118	69	TTG ...	LVR ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
5751	90	GTG ...	VHG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
757915	63	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
608569	216	GTG ...	VFV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
1569844	204	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
429408	48	ATG ...	MHT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
81677	33	CTG ...	LAR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
248387	81	ATG ...	MAR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
882707	129	ATG ...	MAW ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, MEF
604188	252	TTG ...	LTA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
244561	159	GTG ...	VVR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver
611403	150	CTG ...	LIC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
882241	228	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
882731	87	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1580130	39	CTG ...	LKA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF

427301

ENSMUST00000167850

Cope-207

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5578	30	GTG ...	VCC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell
615422	159	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
614601	156	GTG ...	VRS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
244561	159	GTG ...	VVR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, Brain, Spleen_B_cell
243751	84	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, Brain, Spleen_B_cell
246556	39	CTG ...	LQR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell
427856	123	GTG ...	VLP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, Brain, Spleen_B_cell
248387	81	ATG ...	MAR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	3T3, Brain, Spleen_B_cell
238174	63	CTG ...	LGD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell
247540	156	GTG ...	VRS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, Brain, Spleen_B_cell
429408	48	ATG ...	MHT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Spleen_B_cell

5396

ENSMUST00000134822

Cope-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5578	30	GTG ...	VCC ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, Skin_tumor
238875	171	GTG ...	VSS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
917822	63	ACG ...	TIS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1071880	138	TTG ...	LSQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
242710	36	ATG ...	MSS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Spleen_B_cell
79118	69	TTG ...	LVR ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, R1E, Spleen_B_cell
238633	114	GTG ...	VDV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell
249739	144	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1264896	96	AAG ...	KMQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
247536	108	GTG ...	VTN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
248387	81	ATG ...	MAR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC, R1E
81677	33	CTG ...	LAR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Spleen_B_cell
5155	36	GTG ...	VTV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1072182	153	GTG ...	VTN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1071064	129	CTG ...	LKD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
78524	45	GTG ...	VRM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
5567	42	ATG ...	MSQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor, Spleen_B_cell
881432	39	TTG ...	LYC ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC, v6-5
246859	39	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1030646	162	GTG ...	VKN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1582030	102	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
918236	225	CTG ...	LKN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
241823	138	CTG ...	LDR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
238268	90	CTG ...	LLM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
241566	60	CTG ...	LRP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, v6-5
246556	39	CTG ...	LQR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC
81158	87	CTG ...	LDE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
79124	93	GTG ...	VVL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
244561	159	GTG ...	VVR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC
243751	84	CTG ...	LPL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
1107896	36	ATG ...	MRP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	NSC, v6-5
1028847	171	CTG ...	LFD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
5395	102	CTG ...	LKK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Skin_tumor, Spleen_B_cell
429408	48	ATG ...	MHT ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Neutrophil, NSC, R1E, v6-5
1520552	93	ATG ...	MLC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	NSC
242018	147	GTG ...	VLE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1072633	219	CTG ...	LAD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
236170	30	CTG ...	LHQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
240325	156	TTG ...	LQG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
427856	123	GTG ...	VLP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
1265209	45	ATC ...	ISL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1264949	87	ACG ...	TCP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
238174	63	CTG ...	LGD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
1261360	231	ATA ...	IFQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
81837	54	GTG ...	VTW ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
919529	81	ATG ...	MQP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1072361	30	CTG ...	LAM ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, v6-5
918036	141	AAG ...	KPT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
247540	156	GTG ...	VRS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC
918709	159	AAG ...	KNA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC

5752

ENSMUST00000128003

Cope-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
757915	63	CTG ...	LST ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	B_cell, BMDC
920634	210	AAG ...	KPT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC
758240	54	TTG ...	LPV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	B_cell, BMDC
614937	60	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, BMDC
882241	228	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	BMDC
5751	90	GTG ...	VHG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	MEF, NSC, Skin_tumor
243751	84	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	B_cell
248387	81	ATG ...	MAR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	B_cell, BMDC, MEF
757710	48	GTG ...	VRT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	B_cell, BMDC, MEF
241566	60	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	BMDC, R1E
5578	30	GTG ...	VCC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	B_cell, BMDC, MEF, R1E
238174	63	CTG ...	LGD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	B_cell
244561	159	GTG ...	VVR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	BMDC, R1E
882370	66	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	BMDC
881432	39	TTG ...	LYC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	BMDC, R1E
882915	225	GTG ...	VRS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	BMDC, E14
615726	99	GTG ...	VCC ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF	3T3, BMDC, E14, MEF, R1E
615334	108	CTG ...	LQR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	3T3, BMDC, MEF, R1E
429408	48	ATG ...	MHT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	B_cell
427856	123	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	B_cell
247540	156	GTG ...	VRS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	B_cell, BMDC, R1E
246556	39	CTG ...	LQR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	B_cell, BMDC, MEF, R1E
613411	150	ATG ...	MAR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	3T3, BMDC, MEF, NSC

236171

ENSMUST00000128822

Cope-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
247536	108	GTG ...	VTN ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
1028847	171	CTG ...	LFD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
240325	156	TTG ...	LQG ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
242018	147	GTG ...	VLE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
246859	39	CTG ...	LRT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
81837	54	GTG ...	VTW ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, R1E
242710	36	ATG ...	MSS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, R1E
79124	93	GTG ...	VVL ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, R1E
81677	33	CTG ...	LAR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, R1E
5155	36	GTG ...	VTV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
78524	45	GTG ...	VRM ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, R1E
241823	138	CTG ...	LDR ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
238633	114	GTG ...	VDV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
238875	171	GTG ...	VSS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
236170	30	CTG ...	LHQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
249739	144	CTG ...	LEL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
754215	114	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
81158	87	CTG ...	LDE ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, R1E
1030646	162	GTG ...	VKN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
238268	90	CTG ...	LLM ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, R1E

241567

ENSMUST00000168018

Cope-208

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
248387	81	ATG ...	MAR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	Liver
881432	39	TTG ...	LYC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
249739	144	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD Overlapping sORF	Brain, Liver
238633	114	GTG ...	VDV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD Overlapping sORF	Brain, Liver
5395	102	CTG ...	LKK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver
238875	171	GTG ...	VSS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative CDS NMD sORF	Brain, Liver
613411	150	ATG ...	MAR ...	Ribo-seq	ATG		1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
244561	159	GTG ...	VVR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, Liver
427856	123	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
241823	138	CTG ...	LDR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD Overlapping sORF	Brain, Liver
247536	108	GTG ...	VTN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD Overlapping sORF	Brain, Liver
242710	36	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
246859	39	CTG ...	LRT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD Overlapping sORF	Brain, Liver
246556	39	CTG ...	LQR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
754215	114	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain
243751	84	CTG ...	LPL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver, MEF
978174	144	ATC ...	IGS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
241566	60	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver
236170	30	CTG ...	LHQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD Overlapping sORF	Brain, Liver
79124	93	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
247540	156	GTG ...	VRS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, Liver
918236	225	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative CDS NMD sORF	Brain
242018	147	GTG ...	VLE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD Overlapping sORF	Brain, Liver
240325	156	TTG ...	LQG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative CDS NMD sORF	Brain, Liver
81158	87	CTG ...	LDE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
78524	45	GTG ...	VRM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
238268	90	CTG ...	LLM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD Overlapping sORF	Brain, Liver

5156

ENSMUST00000140363

Cope-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
81837	54	GTG ...	VTW ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, Testis
81677	33	CTG ...	LAR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, Testis
78524	45	GTG ...	VRM ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, Testis
80938	114	CTG ...	LTT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, MEF, Neutrophil, R1E, Testis
5155	36	GTG ...	VTV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Skin_tumor
79124	93	GTG ...	VVL ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, Testis
79982	39	CTG ...	LLP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Testis
79118	69	TTG ...	LVR ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
242710	36	ATG ...	MSS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
81158	87	CTG ...	LDE ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, Testis

1073269

ENSMUST00000150968

Cope-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
758240	54	TTG ...	LPV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
242710	36	ATG ...	MSS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	E14, MEF, NSC, v6-5
757710	48	GTG ...	VRT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	MEF, Neutrophil
882707	129	ATG ...	MAW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
757915	63	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
882370	66	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
882583	78	CTG ...	LCA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
882499	114	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF

3017027

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
250249	168	ATG ...	MSS ...	Predicted	ATG		1	Samandi2017	sORF
613411	150	ATG ...	MAR ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

80 ORFs
8 known transcripts
183 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

613411

150

ATG...

MAR...

ATG

InCDS
Overlapping
sORF
Downstream
NMD

Liver, R1E, Glioma,
MEF, MESC,
3T3, BMDC, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		1	Johnstone2016
3017027	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse

5578

GTG...

VCC...

GTG

sORF
Intronic
InCDS
Overlapping

3T3, Spleen_B_cell, E14,
MEF, Neutrophil, NSC,
Skin_tumor, Brain, Liver,
B_cell, BMDC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
427301	ENSMUST00000167850	Cope-207	protein_coding	Ribo-seq		2	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		5	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

250249

168

ATG...

MSS...

ATG

Alternative
InCDS
Overlapping
sORF

B_cell, BMDC, Brain,
Liver, MEF,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
3017027	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

757915

CTG...

LST...

CTG

sORF
InCDS
Overlapping

B_cell, BMDC, MEF,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
1073269	ENSMUST00000150968	Cope-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

238875

171

GTG...

VSS...

GTG

Intronic
sORF
Alternative
CDS
NMD

Spleen_B_cell, Brain, Liver,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

247536

108

GTG...

VTN...

GTG

Intronic
sORF
Downstream
NMD
Overlapping

B_cell, Brain, Spleen_B_cell,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

917822

ACG...

TIS...

ACG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

757710

GTG...

VRT...

GTG

InCDS
Overlapping
sORF

Liver, MEF, Neutrophil,
B_cell, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1073269	ENSMUST00000150968	Cope-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1071880

138

TTG...

LSQ...

TTG

Intronic
sORF

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

242710

ATG...

MSS...

ATG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

BMDC, E14, Spleen_B_cell,
B_cell, Brain, R1E,
MEF, NSC, v6-5,
Liver, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
1073269	ENSMUST00000150968	Cope-206	protein_coding	Ribo-seq		4	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
5156	ENSMUST00000140363	Cope-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

1028847

171

CTG...

LFD...

CTG

Intronic
sORF

Brain, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

920634

210

AAG...

KPT...

AAG

sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

248387

ATG...

MAR...

ATG

Downstream
NMD
sORF
Intronic
InCDS
Overlapping

Liver, MEF, Neutrophil,
NSC, R1E, B_cell,
BMDC, 3T3, Brain,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		5	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
427301	ENSMUST00000167850	Cope-207	protein_coding	Ribo-seq		3	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

881432

TTG...

LYC...

TTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Intronic

Liver, MEF, Neutrophil,
NSC, v6-5, BMDC,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		5	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

240325

156

TTG...

LQG...

TTG

Intronic
sORF
Alternative
CDS
NMD

B_cell, Brain, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

81837

GTG...

VTW...

GTG

Intronic
sORF
Alternative
Overlapping
Upstream

3T3, Liver, Testis,
B_cell, BMDC, Brain,
R1E, MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5156	ENSMUST00000140363	Cope-205	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

79118

TTG...

LVR...

TTG

Intronic
sORF
Alternative
Overlapping
Upstream

BMDC, MEF, R1E,
Spleen_B_cell, Liver, 3T3,
Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	strong	4	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
5156	ENSMUST00000140363	Cope-205	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

242018

147

GTG...

VLE...

GTG

Intronic
sORF
Downstream
NMD
Overlapping

B_cell, Brain, Spleen_B_cell,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

615422

159

GTG...

VVR...

GTG

sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
427301	ENSMUST00000167850	Cope-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse

758240

TTG...

LPV...

TTG

sORF
InCDS
Overlapping

MEF, B_cell, BMDC,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1073269	ENSMUST00000150968	Cope-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

238174

CTG...

LGD...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

Brain, B_cell, MEF,
NSC, 3T3, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
427301	ENSMUST00000167850	Cope-207	protein_coding	Ribo-seq		2	sORFs_org_Mouse

246859

CTG...

LRT...

CTG

Intronic
sORF
Downstream
NMD
Overlapping

B_cell, Brain, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

614601

156

GTG...

VRS...

GTG

sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
427301	ENSMUST00000167850	Cope-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse

614937

CTG...

LRP...

CTG

sORF

3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

244561

159

GTG...

VVR...

GTG

sORF
Downstream
NMD
Intronic
InCDS
Overlapping

3T3, Brain, Spleen_B_cell,
Liver, MEF, Neutrophil,
NSC, BMDC, R1E,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
427301	ENSMUST00000167850	Cope-207	protein_coding	Ribo-seq		3	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		3	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

249739

144

CTG...

LEL...

CTG

Downstream
NMD
Overlapping
sORF
Intronic

Brain, Liver, Spleen_B_cell,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

81677

CTG...

LAR...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

3T3, Liver, Testis,
BMDC, E14, MEF,
Spleen_B_cell, B_cell, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5156	ENSMUST00000140363	Cope-205	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

238633

114

GTG...

VDV...

GTG

Intronic
sORF
Downstream
NMD
Overlapping

E14, Spleen_B_cell, Brain,
Liver, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

78524

GTG...

VRM...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

3T3, Liver, Testis,
MEF, Spleen_B_cell, B_cell,
BMDC, Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5156	ENSMUST00000140363	Cope-205	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1264896

AAG...

KMQ...

AAG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

246556

CTG...

LQR...

CTG

InCDS
Overlapping
sORF
Intronic
Downstream
NMD

Brain, Liver, 3T3,
Spleen_B_cell, MEF, Neutrophil,
NSC, B_cell, BMDC,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
427301	ENSMUST00000167850	Cope-207	protein_coding	Ribo-seq		2	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		4	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

5395

102

CTG...

LKK...

CTG

Alternative
Downstream
NMD
sORF
Intronic

Brain, Liver, BMDC,
E14, Skin_tumor, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		4	sORFs_org_Mouse

5155

GTG...

VTV...

GTG

Intronic
sORF

Spleen_B_cell, Liver, Skin_tumor,
Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
5156	ENSMUST00000140363	Cope-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

247540

156

GTG...

VRS...

GTG

InCDS
Overlapping
sORF
Downstream
NMD
Intronic

Liver, Brain, 3T3,
Spleen_B_cell, B_cell, BMDC,
R1E, E14, MEF,
Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
427301	ENSMUST00000167850	Cope-207	protein_coding	Ribo-seq		3	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		4	sORFs_org_Mouse

882915

225

GTG...

VRS...

GTG

InCDS
Overlapping
sORF

Liver, BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

882241

228

GTG...

VVR...

GTG

sORF
InCDS
Overlapping

BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1072182

153

GTG...

VTN...

GTG

Intronic
sORF

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1071064

129

CTG...

LKD...

CTG

Intronic
sORF

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

5567

ATG...

MSQ...

ATG

Intronic
sORF

R1E, Skin_tumor, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		3	sORFs_org_Mouse

5751

GTG...

VHG...

GTG

sORF
Alternative
InCDS
Overlapping

MEF, NSC, Skin_tumor,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

427856

123

GTG...

VLP...

GTG

Alternative
Downstream
NMD
sORF
Intronic

Liver, MEF, NSC,
3T3, Brain, Spleen_B_cell,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
427301	ENSMUST00000167850	Cope-207	protein_coding	Ribo-seq		3	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

80938

114

CTG...

LTT...

CTG

Intronic
sORF

3T3, Brain, Liver,
MEF, Neutrophil, R1E,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5156	ENSMUST00000140363	Cope-205	retained_intron	Ribo-seq		7	sORFs_org_Mouse

882499

114

ATG...

MRS...

ATG

InCDS
Overlapping
sORF

BMDC, Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
1073269	ENSMUST00000150968	Cope-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse

243751

CTG...

LPL...

CTG

sORF
Alternative
InCDS
Overlapping
Downstream
NMD
Intronic

3T3, Brain, Spleen_B_cell,
B_cell, Liver, MEF,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
427301	ENSMUST00000167850	Cope-207	protein_coding	Ribo-seq		3	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

241823

138

CTG...

LDR...

CTG

Downstream
NMD
Overlapping
sORF
Intronic

Brain, Liver, BMDC,
Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

241566

CTG...

LRP...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic
Downstream
NMD

Liver, E14, MEF,
Neutrophil, NSC, v6-5,
BMDC, R1E, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		5	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1579936

TTG...

LVL...

TTG

Alternative
sORF
Upstream

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

79124

GTG...

VVL...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

B_cell, BMDC, Brain,
R1E, MEF, Spleen_B_cell,
3T3, Liver, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	strong	5	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
5156	ENSMUST00000140363	Cope-205	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1030646

162

GTG...

VKN...

GTG

Intronic
sORF

E14, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

882370

TTG...

LLS...

TTG

InCDS
Overlapping
sORF

Liver, BMDC, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1073269	ENSMUST00000150968	Cope-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1582030

102

CTG...

LTA...

CTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

918236

225

CTG...

LKN...

CTG

Intronic
sORF
Alternative
CDS
NMD

BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

882583

CTG...

LCA...

CTG

InCDS
Overlapping
sORF

BMDC, Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
1073269	ENSMUST00000150968	Cope-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse

238268

CTG...

LLM...

CTG

Intronic
sORF
Downstream
NMD
Overlapping

Spleen_B_cell, B_cell, Brain,
R1E, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

754215

114

CTG...

LPP...

CTG

Alternative
Downstream
NMD
Overlapping
sORF
Intronic

Brain, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

81158

CTG...

LDE...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

MEF, Spleen_B_cell, Brain,
B_cell, BMDC, R1E,
3T3, Liver, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	strong	5	sORFs_org_Mouse
5156	ENSMUST00000140363	Cope-205	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

882707

129

ATG...

MAW...

ATG

sORF
InCDS
Overlapping

MEF, BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1073269	ENSMUST00000150968	Cope-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1107896

ATG...

MRP...

ATG

Intronic
sORF

NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

79982

CTG...

LLP...

CTG

Intronic
sORF

3T3, E14, MEF,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5156	ENSMUST00000140363	Cope-205	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

429408

ATG...

MHT...

ATG

Intronic
sORF
InCDS
Overlapping

3T3, E14, Neutrophil,
NSC, R1E, v6-5,
B_cell, Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		7	sORFs_org_Mouse
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
427301	ENSMUST00000167850	Cope-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1520552

ATG...

MLC...

ATG

Intronic
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

978174

144

ATC...

IGS...

ATC

InCDS
NMD
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1569778

258

CTG...

LGS...

CTG

Alternative
InCDS
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1072633

219

CTG...

LAD...

CTG

Intronic
sORF

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

236170

CTG...

LHQ...

CTG

Downstream
NMD
Overlapping
sORF
Intronic

Brain, Liver, Spleen_B_cell,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
241567	ENSMUST00000168018	Cope-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
236171	ENSMUST00000128822	Cope-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

615726

GTG...

VCC...

GTG

sORF

3T3, BMDC, E14,
MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse

615334

108

CTG...

LQR...

CTG

sORF

3T3, BMDC, MEF,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5752	ENSMUST00000128003	Cope-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse

1265209

ATC...

ISL...

ATC

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1264949

ACG...

TCP...

ACG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

608569

216

GTG...

VFV...

GTG

Alternative
Overlapping
sORF
Upstream

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1569844

204

CTG...

LSL...

CTG

Alternative
InCDS
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1261360

231

ATA...

IFQ...

ATA

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

919529

ATG...

MQP...

ATG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1072361

CTG...

LAM...

CTG

Intronic
sORF

E14, MEF, Neutrophil,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse

604188

252

TTG...

LTA...

TTG

Alternative
Overlapping
sORF
Upstream

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

611403

150

CTG...

LIC...

CTG

Alternative
Overlapping
sORF
Upstream

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

918036

141

AAG...

KPT...

AAG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

918709

159

AAG...

KNA...

AAG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5396	ENSMUST00000134822	Cope-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

882731

CTG...

LPP...

CTG

Alternative
InCDS
Overlapping
sORF

Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1580130

CTG...

LKA...

CTG

Alternative
sORF
Upstream

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
238175	ENSMUST00000066469	Cope-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

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