Transcript 188106

Transcript

ID CARD

MetamORF ID

188106

ENSMUST00000202250

Name

Ociad1-210

Strand

Biotype

protein_coding

Start-end positions

73292807-73306780

CDS Start-stop positions

73294290-73306770

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:68095

Aliases

6030432N09Rik,
AI481327, Asrij, AW557942,
B230209J16Rik, BB021357, Emi2,
ENSMUSG00000029152, Imi2, MGI:1915345,
NCBI:68095, OCIA, Ociad1,
OFF:Ociad1, TPA018

Chr 5

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
176520	66	ATG ...	MGG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
183642	39	ATG ...	MHK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
62675	72	GTG ...	VPV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Neutrophil
65463	81	TTG ...	LSA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Neutrophil
64578	165	GTG ...	VSA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	Neutrophil
63777	111	CTG ...	LPS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Neutrophil
62938	57	CTG ...	LIF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
61934	141	GTG ...	VGD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Neutrophil
62143	54	TTG ...	LQS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, NSC
64647	129	TTG ...	LAI ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF Upstream	Neutrophil
188105	102	TTG ...	LKT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
65239	42	ATG ...	MKS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, NSC
517806	30	CTG ...	LCR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver

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